[Home] | [Total List]

[181181_at]

Description T25B2.2 /REP_DB=WormBase Gene ID /WP=CE14172 /TR=O61751 /GB=AAC17000.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 99      4grp_total > 04      6grp_total_sub > Increase      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 107
1 2 3 4 range
A 66.5
(0.1)
A 		31.9
(-3)
A 		62.1
(-0.3)
A 		99
(3)
M 		67
B 59.1
(-0.9)
A 		66.2
(-0.3)
A 		35.2
(-3)
A 		104.3
(3)
A 		69
C 75.9
(-1.3)
A 		51.9
(-3)
A 		59.5
(-2.5)
A 		138.5
(3)
A 		87
avr 67.2
(-1.4) 		50
(-3) 		52.3
(-2.8) 		113.9
(3) 		64

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 192
1 2 3 4 5 6 range
A 27.7
(-2.4)
A 		35.9
(-2.2)
A 		57.2
(-1.5)
A 		9.4
(-3)
A 		201.5
(3)
P 		127.1
(0.7)
M 		192
B 47.4
(-1.9)
A 		33
(-2.4)
A 		52.3
(-1.7)
A 		18.5
(-3)
A 		176.5
(3)
P 		103.7
(0.2)
A 		158
C 42.5
(-2.3)
A 		75
(-1.2)
A 		20.8
(-3)
A 		56.6
(-1.8)
A 		196.7
(3)
P 		108.2
(-0)
A 		176
avr 39.2
(-2.6) 		48
(-2.3) 		43.4
(-2.4) 		28.2
(-3) 		191.6
(3) 		113
(0.1) 		163
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 24.2
(3)
A 		6.9
(-3)
A 		16.2
(0.2)
A 		14.5
(-0.4)
M 		17
B 18.8
(1.5)
A 		16.4
(0.5)
A 		8.2
(-3)
A 		22.2
(3)
A 		14
C 25.1
(3)
A 		14.9
(-3)
A 		20.7
(0.4)
A 		23.4
(2)
A 		10
avr 22.7
(3) 		12.7
(-3) 		15
(-1.6) 		20
(1.4) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 69
1 2 3 4 5 6 range
A 5.1
(-2.7)
A 		12.8
(-1.9)
A 		12.5
(-2)
A 		2.4
(-3)
A 		60.8
(3)
P 		31
(-0.1)
M 		58
B 16.5
(-2)
A 		11
(-2.5)
A 		12.7
(-2.3)
A 		4.9
(-3)
A 		71.7
(3)
P 		38.7
(0)
A 		67
C 15.8
(-1.9)
A 		22.9
(-1.2)
A 		5.3
(-3)
A 		11.4
(-2.4)
A 		63.6
(3)
P 		36.2
(0.2)
A 		58
avr 12.5
(-2.4) 		15.6
(-2) 		10.2
(-2.6) 		6.2
(-3) 		65.4
(3) 		35.3
(-0.1) 		59
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181181_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16349
Sequence Type Exemplar sequence
Representative Public ID T25B2.2 NCBI
Target Description T25B2.2 /REP_DB=WormBase Gene ID /WP=CE14172 /TR=O61751 /GB=AAC17000.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076632(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076632 NCBI Caenorhabditis elegans T25B2.2 (T25B2.2) mRNA, complete cds. 11/11 None
GENEFINDER00000005635 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:6169732:6173584:1 11/11 None
T25B2.2 ENSEMBL cdna:known chromosome:CEL140:X:6169263:6173682:1 gene:T25B2.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000005632 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:6169731-6171816(+) 95.93 100.0
Public Domain and Genome References
Ensembl T25B2.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC17000 Hypothetical protein T25B2.2 [Caenorhabditis elegans] ref|NP_509033.2| T25B2.2 [Caenorhabditis elegans] 0.0
blast CAE68880 Hypothetical protein CBG14846 [Caenorhabditis briggsae] 1.0E-103
Sequence
Target Sequence 
>C. ELEGANS:181181_AT
gtacatccactaccttgttttttcaaaagaacccattggttgacaatttggacttgagac
catcggctattgagagggggctgtataattttgatgactccatcaaggaaataccaccaa
taaagtatgtcggaactccacgcccgtcgatccaaatgtcgacgtcacctaggcctgctc
tcatggcgaaaagcagtccttccatcgatgagggtgatggtgaagtgacccctactttta
gttcaagctttcgaaatattcctgttagaccctcgattggagaacgtggactacctgcga
tgaaattcacaccagtacttgcaaacggacaattgcaacaaagaggacgtacacttcaaa
aggtaatggcactctttttgaagcagaaaatgaaaaagtctcttgcattttttcaaccac
gagccgatcctcacttcgactttgaacttgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTACATCCACTACCTTGTTTTTTCA 685 459 374 Antisense
TGGACTTGAGACCATCGGCTATTGA 25 549 422 Antisense
TCCAAATGTCGACGTCACCTAGGCC 673 585 524 Antisense
CTAGGCCTGCTCTCATGGCGAAAAG 697 223 542 Antisense
AAGCAGTCCTTCCATCGATGAGGGT 440 151 564 Antisense
GTGACCCCTACTTTTAGTTCAAGCT 586 481 598 Antisense
GAAATATTCCTGTTAGACCCTCGAT 535 361 626 Antisense
TGGAGAACGTGGACTACCTGCGATG 452 549 651 Antisense
TTCACACCAGTACTTGCAAACGGAC 214 683 679 Antisense
GTCTCTTGCATTTTTTCAACCACGA 305 469 771 Antisense
ATCCTCACTTCGACTTTGAACTTGG 431 39 800 Antisense
Sequence Source Affymetrix Proprietary Database