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[181180_at]

Description C53B7.1 /REP_DB=WormBase Gene ID /WP=CE06971 /TR=Q18806 /GB=AAC48277.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 50      6grp_high1_10_10 > 06      4grp_highest_8_8 > 49      4grp_high_8_8 > 42      6grp_highest_nonorm > 40      6grp_total > 15      4grp_total > 45      6grp_highest_sub > De      6grp_cgc > 23      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1166
1 2 3 4 range
A 1154.3
(3)
P 		782.5
(0.4)
P 		439.6
(-2)
P 		298.1
(-3)
P 		856
B 1150.7
(3)
P 		788.1
(0.1)
P 		595.4
(-1.4)
P 		390.6
(-3)
P 		760
C 1463.8
(3)
P 		870.8
(-0.1)
P 		620.8
(-1.4)
P 		324.1
(-3)
P 		1140
avr 1256.3
(3) 		813.8
(0.1) 		551.9
(-1.6) 		337.6
(-3) 		919

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 895
1 2 3 4 5 6 range
A 1068.9
(3)
P 		876.6
(1.4)
P 		528.9
(-1.5)
P 		532
(-1.5)
P 		350.9
(-3)
P 		384.1
(-2.7)
P 		718
B 1057.4
(3)
P 		847
(1.3)
P 		624.3
(-0.5)
P 		591.7
(-0.7)
P 		486.9
(-1.6)
P 		307.4
(-3)
P 		750
C 1202.5
(3)
P 		830.2
(0.5)
P 		558.6
(-1.4)
P 		551.5
(-1.4)
P 		357.3
(-2.8)
P 		320.9
(-3)
P 		882
avr 1109.6
(3) 		851.3
(1) 		570.6
(-1.2) 		558.4
(-1.3) 		398.4
(-2.5) 		337.5
(-3) 		772
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 441
1 2 3 4 range
A 420.3
(3)
P 		169.9
(-1)
P 		114.9
(-1.9)
P 		43.6
(-3)
P 		377
B 366.9
(3)
P 		194.7
(-0.6)
P 		138
(-1.8)
P 		83.2
(-3)
P 		284
C 484.6
(3)
P 		250.4
(-0.3)
P 		216.4
(-0.7)
P 		54.7
(-3)
P 		430
avr 423.9
(3) 		205
(-0.6) 		156.4
(-1.4) 		60.5
(-3) 		363

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 352
1 2 3 4 5 6 range
A 197.1
(-0.2)
P 		311.8
(3)
P 		115.2
(-2.4)
P 		134.9
(-1.9)
P 		105.9
(-2.7)
P 		93.5
(-3)
P 		218
B 367.9
(3)
P 		281.9
(1)
P 		151.6
(-2.1)
P 		156.7
(-2)
P 		197.8
(-1)
P 		114.6
(-3)
P 		253
C 445.7
(3)
P 		253.3
(-0.4)
P 		142.2
(-2.4)
P 		110.9
(-2.9)
P 		115.6
(-2.9)
P 		107.4
(-3)
P 		338
avr 336.9
(3) 		282.3
(1.6) 		136.3
(-2.2) 		134.2
(-2.2) 		139.8
(-2.1) 		105.2
(-3) 		232
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181180_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16451
Sequence Type Exemplar sequence
Representative Public ID C53B7.1 NCBI
Target Description C53B7.1 /REP_DB=WormBase Gene ID /WP=CE06971 /TR=Q18806 /GB=AAC48277.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076754(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076754 NCBI Caenorhabditis elegans neuRonal IGCAM family member (rig-3) (rig-3) mRNA, complete cds. 11/11 None
GENEFINDER00000013984 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:6853596:6860504:1 11/11 None
SNAP00000013980 ENSEMBL cdna:SNAP chromosome:CEL140:X:6858314:6860504:1 11/11 None
C53B7.1 ENSEMBL cdna:known chromosome:CEL140:X:6853570:6860868:1 gene:C53B7.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:6853595-6860504(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol rig-3
Ensembl C53B7.1
Entrez Gene 180958 Entrez gene
SwissProt Q18806 EMBL-EBI
WormBase CE06971 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC48277 Neuronal igcam protein 3 [Caenorhabditis elegans] ref|NP_509155.1| neuRonal IGCAM family member (rig-3) [Caenorhabditis elegans] 0.0
blast CAE65802 Hypothetical protein CBG10909 [Caenorhabditis briggsae] 0.0
blast XP_393339 PREDICTED: similar to EG:EG0007.3 [Apis mellifera] 3.0E-12
Protein Domains
Database ID Description E-Value
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 4.9E-5
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.1E-4
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 4.9E-5
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.1E-4
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 4.9E-5
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.1E-4
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000013984 1 9-31
Sequence
Target Sequence 
>C. ELEGANS:181180_AT
agttcgtcactacactttttatcacggagacgaggagatcaagatgagcgataaattcaa
catttttgtgaatgtcggagtttctcaaggagcacatctcaaaattcacaatgtcaatga
gaacgatttgggcacttacaaatgcgaagctaacaatatcaaagcaaaatcctaccatac
aattcatcttagagaagccaatgccccagctgagccaaaagtaactcttatcgaggacaa
gaggcactccatcatctggaaagtagaatctatcgatcgagatccagatcttccaatgac
cgccgttgaaattcgccacctccgagccggaaccgccgaagcttctggagtgtccgatga
ggatatttctgatgcctactggaagagtcactcaattttcatgcagagaaatatcaagga
tgatggaatttacgaaattaatgggctaagacatggacatgaatatgtctggagattccg
acagattaatgaagctggatttggagatagtgtggtattgcgtgcaaaaacgttagatga
tcacgatttggaaatgatggattcggcatctgacagcaaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGTTCGTCACTACACTTTTTATCAC 307 63 849 Antisense
GGAGTTTCTCAAGGAGCACATCTCA 292 517 925 Antisense
AAATCCTACCATACAATTCATCTTA 328 119 1015 Antisense
ATCTTAGAGAAGCCAATGCCCCAGC 699 31 1034 Antisense
CAATGCCCCAGCTGAGCCAAAAGTA 210 183 1047 Antisense
GACAAGAGGCACTCCATCATCTGGA 450 365 1084 Antisense
ATCTTCCAATGACCGCCGTTGAAAT 42 31 1136 Antisense
GCCGAAGCTTCTGGAGTGTCCGATG 500 285 1183 Antisense
GGATATTTCTGATGCCTACTGGAAG 664 509 1209 Antisense
AAGAGTCACTCAATTTTCATGCAGA 225 155 1231 Antisense
ATGGATTCGGCATCTGACAGCAAAT 534 51 1405 Antisense
Sequence Source Affymetrix Proprietary Database