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[181178_at] 7TM chemoreceptor, srg family

Description C10G8.1 /REP_DB=WormBase Gene ID /WP=CE08072 /TR=Q94168 /GB=AAB09168.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 21      4grp_total > 26      6grp_cgc > 62      6grp_cgc_sub > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 65
1 2 3 4 range
A 4
(-3)
A 		61.3
(2.7)
A 		28.5
(-0.6)
A 		64.7
(3)
A 		61
B 19
(-0.1)
A 		37.8
(3)
A 		1.4
(-3)
A 		29
(1.5)
A 		36
C 1.1
(-3)
A 		1.8
(-2.9)
A 		1.5
(-3)
A 		65.9
(3)
A 		65
avr 8
(-3) 		33.6
(0.4) 		10.5
(-2.7) 		53.2
(3) 		45

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 11.3
(0.3)
A 		18
(3)
A 		4.1
(-2.6)
A 		3
(-3)
A 		4.7
(-2.3)
A 		5
(-2.2)
A 		15
B 22
(3)
A 		20
(2.4)
A 		18
(1.9)
A 		4.3
(-2)
A 		3.6
(-2.2)
A 		0.8
(-3)
A 		21
C 3.7
(-3)
A 		26.7
(2.2)
A 		30.1
(3)
A 		28.8
(2.7)
A 		7
(-2.3)
A 		7
(-2.3)
A 		26
avr 12.3
(-0.2) 		21.6
(3) 		17.4
(1.5) 		12
(-0.3) 		5.1
(-2.7) 		4.3
(-3) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 1.5
(-3)
A 		13.3
(3)
A 		7.4
(0)
A 		9.5
(1.1)
A 		12
B 6.1
(0.9)
A 		9.3
(3)
A 		0.3
(-3)
A 		6.2
(0.9)
A 		9
C 0.4
(-3)
A 		0.5
(-2.9)
A 		0.5
(-2.9)
A 		11.1
(3)
A 		11
avr 2.7
(-3) 		7.7
(1.8) 		2.7
(-3) 		8.9
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 2.1
(-1.6)
A 		6.4
(3)
A 		0.9
(-2.9)
A 		0.8
(-3)
A 		1.4
(-2.4)
A 		1.2
(-2.6)
A 		6
B 7.6
(3)
A 		6.7
(2.3)
A 		4.4
(0.4)
A 		1.1
(-2.3)
A 		1.5
(-2)
A 		0.3
(-3)
A 		7
C 1.4
(-3)
A 		8.1
(3)
A 		7.7
(2.6)
A 		5.8
(0.9)
A 		2.3
(-2.2)
A 		2.3
(-2.2)
A 		7
avr 3.7
(-0.5) 		7.1
(3) 		4.3
(0.1) 		2.6
(-1.7) 		1.7
(-2.6) 		1.3
(-3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181178_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11812
Sequence Type Exemplar sequence
Representative Public ID C10G8.1 NCBI
Target Description C10G8.1 /REP_DB=WormBase Gene ID /WP=CE08072 /TR=Q94168 /GB=AAB09168.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072021(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072021 NCBI Caenorhabditis elegans Serpentine Receptor, class G (gamma) family member (srg-26) (srg-26) mRNA, complete cds. 11/11 None
SNAP00000038006 ENSEMBL cdna:SNAP chromosome:CEL140:V:5331202:5332867:1 11/11 None
GENEFINDER00000038012 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:5331079:5332867:1 11/11 None
C10G8.1 ENSEMBL cdna:known chromosome:CEL140:V:5331079:5332867:1 gene:C10G8.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5331078-5332867(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srg family
Gene Symbol srg-26
Ensembl C10G8.1
Entrez Gene 182500 Entrez gene
SwissProt Q94168 EMBL-EBI
WormBase CE08072 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7165 signal transduction inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4888 transmembrane receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB09168 Serpentine receptor, class g (gamma) protein 26 [Caenorhabditis elegans] ref|NP_504422.1| Serpentine Receptor, class G (gamma) family member (srg-26) [Caenorhabditis elegans] 0.0
blast AAB09168 Serpentine receptor, class g (gamma) protein 26 [Caenorhabditis elegans] ref|NP_504422.1| Serpentine Receptor, class G (gamma) family member (srg-26) [Caenorhabditis elegans] 1.0E-170
blast NP_872226 Serpentine Receptor, class G (gamma) family member (srg-29) [Caenorhabditis elegans] gb|AAO25998.1| Serpentine receptor, class g (gamma) protein 29 [Caenorhabditis elegans] 1.0E-125
blast CAE62632 Hypothetical protein CBG06762 [Caenorhabditis briggsae] 1.0E-119
Protein Domains
Database ID Description E-Value
Pfam IPR000609 EMBL-EBI Integral membrane protein Srg, nematode type 3.5E-24
Pfam IPR000609 EMBL-EBI Integral membrane protein Srg, nematode type 3.5E-24
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504422.1 7 30-52,65-87,109-131,157-179,199-221,242-264,277-299
C10G8.1 7 30-52,65-87,109-131,157-179,199-221,242-264,277-299
SNAP00000038006 5 24-46,116-138,158-180,201-223,236-258
GENEFINDER00000038012 7 30-52,65-87,109-131,157-179,199-221,242-264,277-299
Sequence
Target Sequence 
>C. ELEGANS:181178_AT
tacttccatcaattatcctttcaaacataaacagatttgggccatgtattgcaagaaagt
tattattgcaacattcataattccattactcggagtttggcctgttgcagtagggcacac
cagttatctgccattttatggaaacacattcatagcctacgagcatcgaattccatgggc
tcgaacatcttacggacgacttgctatcgcattgcctacattatttttcactatttattc
aagtgttttgacttcagcaaaattaagaaaactaggaaaacatatgagaaaagttgaata
ttcgatgaatattgccacaattttcaacacgttaggattcatattggtggttattctaaa
tttttgttatgttggaataagtgcgcaagctcttactacaaaattgggaaacacactggc
tatgggaggtactcaattgagcaacgacttttatatgatgggaggcccagttgtgcttct
tatactcgac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACTTCCATCAATTATCCTTTCAAA 436 645 423 Antisense
ATTACTCGGAGTTTGGCCTGTTGCA 438 13 507 Antisense
TGGCCTGTTGCAGTAGGGCACACCA 247 545 520 Antisense
GGGCACACCAGTTATCTGCCATTTT 702 491 535 Antisense
GGAAACACATTCATAGCCTACGAGC 362 527 562 Antisense
GAATTCCATGGGCTCGAACATCTTA 362 315 590 Antisense
GAACATCTTACGGACGACTTGCTAT 179 351 605 Antisense
GACTTGCTATCGCATTGCCTACATT 635 369 620 Antisense
AAGTGCGCAAGCTCTTACTACAAAA 447 119 801 Antisense
AACACACTGGCTATGGGAGGTACTC 445 135 832 Antisense
CCCAGTTGTGCTTCTTATACTCGAC 298 257 888 Antisense
Sequence Source Affymetrix Proprietary Database