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[181177_at] 7TM chemoreceptor, sra family

Description F18C5.8 /REP_DB=WormBase Gene ID /WP=CE02657 /TR=Q19552 /GB=AAA68414.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 92      4grp_total > 11      6grp_cgc > 97      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 153
1 2 3 4 range
A 41.7
(-3)
A 		67.9
(-1.8)
A 		49.8
(-2.6)
A 		178.1
(3)
P 		136
B 87.4
(2.4)
P 		69
(0.8)
A 		25.1
(-3)
A 		94.1
(3)
P 		69
C 49.3
(-2.8)
A 		49.5
(-2.8)
A 		45.8
(-3)
A 		163.3
(3)
P 		118
avr 59.5
(-1.9) 		62.1
(-1.7) 		40.2
(-3) 		145.2
(3) 		105

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 72
1 2 3 4 5 6 range
A 40.8
(-0.2)
A 		39.3
(-0.3)
A 		39.3
(-0.3)
A 		7.3
(-3)
A 		79.5
(3)
A 		24
(-1.6)
A 		72
B 39.1
(-0.5)
P 		71
(3)
A 		32
(-1.3)
A 		52.2
(0.9)
A 		41.7
(-0.2)
M 		16.8
(-3)
A 		54
C 37.7
(0.1)
A 		52.3
(1.6)
A 		8.1
(-3)
A 		66.2
(3)
A 		52.9
(1.6)
A 		21.1
(-1.7)
A 		58
avr 39.2
(-0) 		54.2
(2.4) 		26.5
(-2.1) 		41.9
(0.4) 		58
(3) 		20.6
(-3) 		37
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 15.2
(-2)
A 		14.7
(-2.2)
A 		13
(-3)
A 		26.1
(3)
P 		13
B 27.9
(3)
P 		17
(0)
A 		5.8
(-3)
A 		20
(0.9)
P 		22
C 16.3
(-2.1)
A 		14.2
(-3)
A 		16
(-2.2)
A 		27.5
(3)
P 		13
avr 19.8
(0.8) 		15.3
(-1.3) 		11.6
(-3) 		24.5
(3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 7.5
(-1.5)
A 		14
(0.3)
A 		8.6
(-1.2)
A 		1.8
(-3)
A 		24
(3)
A 		5.9
(-1.9)
A 		22
B 13.6
(-0.4)
P 		23.6
(3)
A 		7.8
(-2.4)
A 		13.8
(-0.4)
A 		16.9
(0.7)
M 		6.2
(-3)
A 		17
C 14
(1.8)
A 		16
(2.6)
A 		2.1
(-3)
A 		13.3
(1.5)
A 		17.1
(3)
A 		7
(-1)
A 		15
avr 11.7
(-0.5) 		17.9
(2.4) 		6.2
(-3) 		9.6
(-1.4) 		19.3
(3) 		6.4
(-2.9) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181177_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5183
Sequence Type Exemplar sequence
Representative Public ID F18C5.8 NCBI
Target Description F18C5.8 /REP_DB=WormBase Gene ID /WP=CE02657 /TR=Q19552 /GB=AAA68414.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062930(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062930 NCBI Caenorhabditis elegans Serpentine Receptor, class A (alpha) family member (sra-29) (sra-29) mRNA, complete cds. 11/11 None
F18C5.8 ENSEMBL cdna:known chromosome:CEL140:II:6574323:6575692:-1 gene:F18C5.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6574319-6575689(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, sra family
Gene Symbol sra-29
Ensembl F18C5.8
Entrez Gene 184636 Entrez gene
SwissProt Q19552 EMBL-EBI
WormBase CE02657 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7606 sensory perception of chemical stimulus inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4888 transmembrane receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA68414 Serpentine receptor, class a (alpha) protein 29 [Caenorhabditis elegans] ref|NP_495331.1| Serpentine Receptor, class A (alpha) family member (sra-29) [Caenorhabditis elegans] sp|Q19552|SRA29_CAEEL Serpentine receptor class alpha-29 (Protein sra-29) 0.0
blast AAA68415 Serpentine receptor, class a (alpha) protein 28 [Caenorhabditis elegans] ref|NP_495329.1| Serpentine Receptor, class A (alpha) family member (sra-28) [Caenorhabditis elegans] sp|Q19550|SRA28_CAEEL Serpentine receptor class alpha-28 (Protein sra-28) 1.0E-102
blast AAA68773 Serpentine receptor, class a (alpha) protein 31 [Caenorhabditis elegans] ref|NP_495332.2| Serpentine Receptor, class A (alpha) family member (sra-31) [Caenorhabditis elegans] sp|Q18881|SRA31_CAEEL Serpentine receptor class alpha-31 (Protein sra-31) 4.0E-89
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_495331.1 6 27-49,108-130,143-165,198-215,240-262,277-299
F18C5.8 6 27-49,108-130,143-165,198-215,240-262,277-299
Sequence
Target Sequence 
>C. ELEGANS:181177_AT
acgagctatgttccaatgtgcaattatccaccagcttcgtcagtttcgggaactaaattt
tattttataaatgatagtcggataattatcatggggactatttttatgtgttctcttttt
ctgtatattcacaataaatctcgagaaaaaagaatgatatttaatgtctataatactgat
tcccggtataagtcttatgagaatttcttggccaccagagcagtatgtataattatattt
tctcaaattacttgccttggtattacgtcgttcgttccatcaatattcaatcaatttcga
caatcgatttctccggattggttccatttaatacttgcatttatggcgggtgcaacctac
tcaaattttttccttccattaattgtaatatatgaaacacaactaataattgcccatcgt
cataaactgatcaaaaaactaaaaagccaaaaagaagaattttcggatcactttgcgtct
c

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACGAGCTATGTTCCAATGTGCAATT 689 91 523 Antisense
ATGTGCAATTATCCACCAGCTTCGT 709 49 538 Antisense
CCAGCTTCGTCAGTTTCGGGAACTA 116 273 553 Antisense
GGGGACTATTTTTATGTGTTCTCTT 694 497 615 Antisense
GAATTTCTTGGCCACCAGAGCAGTA 235 325 723 Antisense
CTTGCCTTGGTATTACGTCGTTCGT 290 217 773 Antisense
GTTCGTTCCATCAATATTCAATCAA 124 443 792 Antisense
TCGATTTCTCCGGATTGGTTCCATT 453 603 826 Antisense
GTGCAACCTACTCAAATTTTTTCCT 544 457 872 Antisense
ATAATTGCCCATCGTCATAAACTGA 697 25 928 Antisense
GAATTTTCGGATCACTTTGCGTCTC 473 323 979 Antisense
Sequence Source Affymetrix Proprietary Database