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[181175_at]

Description T08A9.4 /REP_DB=WormBase Gene ID /WP=CE04919 /TR=Q22335 /GB=AAA81413.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 80      4grp_total > 17      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 49
1 2 3 4 range
A 43.1
(-2.5)
M 		39.8
(-3)
A 		56.5
(-0.6)
A 		80.7
(3)
M 		41
B 31.7
(-3)
A 		32.8
(-2.8)
A 		34.4
(-2.6)
A 		71
(3)
M 		39
C 43
(-3)
A 		73.5
(3)
P 		49.9
(-1.6)
A 		66
(1.5)
A 		31
avr 39.3
(-3) 		48.7
(-1.3) 		46.9
(-1.6) 		72.6
(3) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 12.6
(-3)
A 		29.4
(-0.8)
A 		37.4
(0.3)
A 		54
(2.5)
A 		57.4
(3)
A 		45.3
(1.4)
A 		45
B 43.8
(-0.4)
A 		41.4
(-0.9)
M 		34.1
(-2.4)
A 		59.7
(3)
P 		31.3
(-3)
A 		37.8
(-1.6)
A 		28
C 47.5
(1.3)
A 		56.8
(3)
A 		45.9
(1)
A 		35.6
(-0.8)
A 		23.4
(-3)
A 		40.5
(0.1)
P 		33
avr 34.6
(-3) 		42.5
(0.1) 		39.1
(-1.2) 		49.8
(3) 		37.4
(-1.9) 		41.2
(-0.4) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 15.7
(3)
M 		8.6
(-3)
A 		14.8
(2.2)
A 		11.8
(-0.3)
M 		7
B 10.1
(-1.2)
A 		8.1
(-2.9)
A 		8
(-3)
A 		15.1
(3)
M 		7
C 14.2
(-1.1)
A 		21.1
(3)
P 		17.4
(0.8)
A 		11.1
(-3)
A 		10
avr 13.3
(2.3) 		12.6
(-3) 		13.4
(3) 		12.7
(-2.3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 2.3
(-3)
A 		10.5
(0.3)
A 		8.2
(-0.6)
A 		13.7
(1.6)
A 		17.3
(3)
A 		11
(0.5)
A 		15
B 15.2
(2.5)
A 		13.8
(1.4)
M 		8.3
(-3)
A 		15.8
(3)
P 		12.7
(0.5)
A 		14.1
(1.6)
A 		8
C 17.6
(3)
A 		17.3
(2.8)
A 		11.7
(-0.4)
A 		7.2
(-3)
A 		7.6
(-2.8)
A 		13.6
(0.7)
P 		10
avr 11.7
(0.1) 		13.9
(3) 		9.4
(-3) 		12.2
(0.7) 		12.5
(1.1) 		12.9
(1.7) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181175_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16252
Sequence Type Exemplar sequence
Representative Public ID T08A9.4 NCBI
Target Description T08A9.4 /REP_DB=WormBase Gene ID /WP=CE04919 /TR=Q22335 /GB=AAA81413.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076833(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076833 NCBI Caenorhabditis elegans T08A9.4 (T08A9.4) mRNA, complete cds. 10/11 None
T08A9.4 ENSEMBL cdna:known chromosome:CEL140:X:7313397:7313906:1 gene:T08A9.4 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000001750 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:7313395-7313907(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T08A9.4
Entrez Gene 188263 Entrez gene
SwissProt Q22335 EMBL-EBI
WormBase CE35761 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_509234 T08A9.4 [Caenorhabditis elegans] gb|AAA81413.2| Hypothetical protein T08A9.4 [Caenorhabditis elegans] 2.0E-32
blast CAB07663 Hypothetical protein T10C6.7 [Caenorhabditis elegans] ref|NP_507028.1| T10C6.7 [Caenorhabditis elegans] 4.0E-11
blast T31804 hypothetical protein F29G9.7 - Caenorhabditis elegans 8.0E-11
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 8.1E-7
Sequence
Target Sequence 
>C. ELEGANS:181175_AT
ccgaacttctctcttgtggtttgataaagaaaaagcagaaacaaccgacgttcgaacgat
tcctgcagctcccttctgaagccttagccaacattctcaagattcttcgcgctgttcaaa
tattcgaattgtcccagttttcgatgagaatgcgcacgttggtcaaggctgcttattttc
ttaacttattttcgacttcaaaactctttgcggatcatagcaaaatcagttgctacactg
cacacttcgagtcttgtgtaccagcttgccgccagtatttctccaacattctcatttgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCGAACTTCTCTCTTGTGGTTTGAT 507 263 23 Antisense
TGAAGCCTTAGCCAACATTCTCAAG 98 573 99 Antisense
GATTCTTCGCGCTGTTCAAATATTC 481 431 123 Antisense
GAATTGTCCCAGTTTTCGATGAGAA 382 323 148 Antisense
GAGAATGCGCACGTTGGTCAAGGCT 162 391 168 Antisense
GGTCAAGGCTGCTTATTTTCTTAAC 705 503 183 Antisense
TTTCGACTTCAAAACTCTTTGCGGA 414 671 212 Antisense
AATCAGTTGCTACACTGCACACTTC 373 171 246 Antisense
TACACTGCACACTTCGAGTCTTGTG 102 641 256 Antisense
CACTTCGAGTCTTGTGTACCAGCTT 305 195 265 Antisense
GTATTTCTCCAACATTCTCATTTGC 483 453 297 Antisense
Sequence Source Affymetrix Proprietary Database