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[181173_at]

Description F26G1.3 /REP_DB=WormBase Gene ID /WP=CE02695 /TR=Q19827 /GB=AAK31500.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 83      4grp_total > 33      6grp_total_sub > Hat      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 67
1 2 3 4 range
A 4.3
(-3)
A 		47.2
(3)
A 		19.2
(-0.9)
A 		17.3
(-1.2)
A 		43
B 1
(-3)
A 		9.9
(0.5)
A 		16.2
(3)
A 		3.1
(-2.2)
A 		15
C 16
(-3)
A 		30
(-1.4)
A 		37.4
(-0.5)
A 		67.9
(3)
P 		52
avr 7.1
(-3) 		29
(2.9) 		24.3
(1.6) 		29.4
(3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 309
1 2 3 4 5 6 range
A 42.8
(-2.1)
A 		6.2
(-3)
A 		76.3
(-1.2)
P 		240.6
(3)
P 		237.9
(2.9)
P 		20.7
(-2.6)
A 		234
B 22.9
(-2.9)
A 		18.8
(-3)
A 		49.3
(-2.4)
A 		153.7
(-0.3)
P 		315.1
(3)
P 		45.3
(-2.5)
P 		296
C 56.1
(-2.2)
A 		22.6
(-3)
A 		30.4
(-2.8)
P 		232
(2.1)
P 		268.1
(3)
P 		27.7
(-2.9)
P 		246
avr 40.6
(-2.4) 		15.9
(-3) 		52
(-2.2) 		208.8
(1.5) 		273.7
(3) 		31.2
(-2.6) 		258
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 1.6
(-3)
A 		10.3
(3)
A 		5
(-0.7)
A 		2.5
(-2.4)
A 		9
B 0.3
(-3)
A 		2.4
(0.7)
A 		3.7
(3)
A 		0.7
(-2.3)
A 		3
C 5.3
(-3)
A 		8.6
(-0.4)
A 		13
(3)
A 		11.4
(1.8)
P 		8
avr 2.4
(-3) 		7.1
(2.9) 		7.2
(3) 		4.9
(0.1) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 126
1 2 3 4 5 6 range
A 7.9
(-2.5)
A 		2.2
(-3)
A 		16.6
(-1.8)
P 		61
(2.1)
P 		71.8
(3)
P 		5
(-2.8)
A 		70
B 8
(-2.9)
A 		6.2
(-3)
A 		12
(-2.7)
A 		40.7
(-1.3)
P 		128
(3)
P 		16.9
(-2.5)
P 		122
C 20.8
(-2)
A 		6.9
(-3)
A 		7.7
(-2.9)
P 		46.7
(-0)
P 		86.8
(3)
P 		9.3
(-2.8)
P 		80
avr 12.2
(-2.5) 		5.1
(-3) 		12.1
(-2.5) 		49.5
(-0.1) 		95.5
(3) 		10.4
(-2.6) 		90
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181173_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5721
Sequence Type Exemplar sequence
Representative Public ID F26G1.3 NCBI
Target Description F26G1.3 /REP_DB=WormBase Gene ID /WP=CE02695 /TR=Q19827 /GB=AAK31500.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062452(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062452 NCBI Caenorhabditis elegans F26G1.3 (F26G1.3) mRNA, complete cds. 11/11 None
SNAP00000000800 ENSEMBL cdna:SNAP chromosome:CEL140:II:4758801:4759276:1 11/11 None
F26G1.3 ENSEMBL cdna:known chromosome:CEL140:II:4758801:4759276:1 gene:F26G1.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:4758799-4759275(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F26G1.3
Entrez Gene 184994 Entrez gene
SwissProt Q19827 EMBL-EBI
WormBase CE02695 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK31500 Hypothetical protein F26G1.3 [Caenorhabditis elegans] ref|NP_494853.1| F26G1.3 [Caenorhabditis elegans] 1.0E-74
blast CAE73214 Hypothetical protein CBG20620 [Caenorhabditis briggsae] 5.0E-22
Protein Domains
Database ID Description E-Value
Pfam IPR001534 EMBL-EBI Transthyretin-like 7.2E-28
Sequence
Target Sequence 
>C. ELEGANS:181173_AT
ggatcatccaagctttgtaattcatggcaaattaaaatgcaatggatatccaattaacgg
cattgtcactatggtcgatagattctatatagtcttcgatcatttattaaacttcagcga
aatacccagaagcgggaaattccgtttgtttggagaaccaaatgacgattccctcaacgc
tgttctcatcgttgagcacaaatgccataatttcacttttagaagaactaatcaaaaagt
caatcgattttcgaaatttacaattgatttggaagacttgcacagaaataataatacact
ggaaatcgatatagaactagcaaacaagcaatcaacag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGATCATCCAAGCTTTGTAATTCAT 202 511 30 Antisense
GGATATCCAATTAACGGCATTGTCA 706 509 73 Antisense
AACGGCATTGTCACTATGGTCGATA 408 141 85 Antisense
GATAGATTCTATATAGTCTTCGATC 394 425 106 Antisense
AGTCTTCGATCATTTATTAAACTTC 513 61 120 Antisense
TTAAACTTCAGCGAAATACCCAGAA 172 683 136 Antisense
GAGAACCAAATGACGATTCCCTCAA 346 391 182 Antisense
CCCTCAACGCTGTTCTCATCGTTGA 557 259 200 Antisense
GCACAAATGCCATAATTTCACTTTT 311 317 225 Antisense
GATTTGGAAGACTTGCACAGAAATA 194 427 295 Antisense
GAACTAGCAAACAAGCAATCAACAG 432 349 343 Antisense
Sequence Source Affymetrix Proprietary Database