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[181172_s_at]

Description C31H2.1 /REP_DB=WormBase Gene ID /WP=CE27809 /TR=Q18344 /GB=AAA83335.2 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 81      6grp_high1_10_10 > 29      4grp_highest_8_8 > 40      4grp_high_8_8 > 50      6grp_highest_nonorm > 30      6grp_total > 28      4grp_total > 61      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 782
1 2 3 4 range
A 1299.8
(3)
P 		873.1
(-0.3)
P 		864.1
(-0.3)
P 		517.9
(-3)
P 		782
B 1126.7
(2.6)
P 		1123.5
(2.5)
P 		1154
(3)
P 		787.8
(-3)
P 		366
C 1177.1
(2.2)
P 		1249
(3)
P 		1047.2
(0.8)
P 		703.3
(-3)
P 		546
avr 1201.2
(3) 		1081.9
(1.7) 		1021.8
(1) 		669.7
(-3) 		532

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 693
1 2 3 4 5 6 range
A 1040.4
(3)
P 		690.9
(-1)
P 		632.2
(-1.6)
P 		511.5
(-3)
P 		991.8
(2.4)
P 		514
(-3)
P 		529
B 1204.5
(3)
P 		904.1
(-0.5)
P 		695.1
(-3)
P 		710.9
(-2.8)
P 		741.2
(-2.5)
P 		702.1
(-2.9)
P 		509
C 1041.5
(3)
P 		819
(0.4)
P 		746.5
(-0.4)
P 		518.4
(-3)
P 		807.2
(0.3)
P 		889
(1.3)
P 		523
avr 1095.5
(3) 		804.7
(-0.4) 		691.3
(-1.7) 		580.3
(-3) 		846.7
(0.1) 		701.7
(-1.6) 		515
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 398
1 2 3 4 range
A 473.3
(3)
P 		189.5
(-1.3)
P 		225.9
(-0.7)
P 		75.8
(-3)
P 		398
B 359.3
(3)
P 		277.5
(0.4)
P 		267.4
(0.1)
P 		167.9
(-3)
P 		191
C 389.7
(3)
P 		359.1
(2.3)
P 		365
(2.5)
P 		118.6
(-3)
P 		271
avr 407.4
(3) 		275.4
(0.2) 		286.1
(0.5) 		120.8
(-3) 		287

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 315
1 2 3 4 5 6 range
A 191.8
(-0.7)
P 		245.7
(1.2)
P 		137.7
(-2.6)
P 		129.7
(-2.8)
P 		299.3
(3)
P 		125.1
(-3)
P 		174
B 419.1
(3)
P 		300.9
(0.2)
P 		168.8
(-3)
P 		188.3
(-2.5)
P 		301.1
(0.2)
P 		261.8
(-0.8)
P 		250
C 386
(3)
P 		249.9
(0.1)
P 		190
(-1.2)
P 		104.3
(-3)
P 		261.2
(0.3)
P 		297.6
(1.1)
P 		282
avr 332.3
(3) 		265.5
(0.9) 		165.5
(-2.2) 		140.8
(-3) 		287.2
(1.6) 		228.2
(-0.3) 		192
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 181172_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17217
Sequence Type Exemplar sequence
Representative Public ID C31H2.1 NCBI
Target Description C31H2.1 /REP_DB=WormBase Gene ID /WP=CE27809 /TR=Q18344 /GB=AAA83335.2 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171949(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171949 NCBI Caenorhabditis elegans C31H2.1b (C31H2.1) mRNA, complete cds. 11/11 None
C31H2.1b ENSEMBL cdna:known chromosome:CEL140:X:5138958:5146774:1 gene:C31H2.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
180784 2 1 NM_171949 181172_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:5138984-5148774(+) 98.78 100.0
Public Domain and Genome References
Ensembl C31H2.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAM51524 Hypothetical protein C31H2.1b [Caenorhabditis elegans] ref|NP_741779.1| C31H2.1b [Caenorhabditis elegans] 0.0
blast AAA83335 Hypothetical protein C31H2.1a [Caenorhabditis elegans] ref|NP_741778.1| C31H2.1a [Caenorhabditis elegans] 0.0
blast CAE68698 Hypothetical protein CBG14616 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:181172_S_AT
attttttggtacataccttcctcattcttaagtattgccaatattagtagttcacttatt
ttctacattccaacttctagtcaattcctcgtgtctgagagttttagtgctacggcaatt
gtttattttttgctattttatgttgcaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTTTTTGGTACATACCTTCCTCAT 130 13 2011 Antisense
TACATACCTTCCTCATTCTTAAGTA 665 643 2020 Antisense
TTCCTCATTCTTAAGTATTGCCAAT 548 699 2028 Antisense
GTATTGCCAATATTAGTAGTTCACT 541 451 2042 Antisense
AGTAGTTCACTTATTTTCTACATTC 47 63 2056 Antisense
ATTTTCTACATTCCAACTTCTAGTC 383 13 2068 Antisense
ACATTCCAACTTCTAGTCAATTCCT 324 103 2075 Antisense
TCTAGTCAATTCCTCGTGTCTGAGA 585 613 2086 Antisense
GTGTCTGAGAGTTTTAGTGCTACGG 416 487 2101 Antisense
TAGTGCTACGGCAATTGTTTATTTT 352 653 2115 Antisense
ATTTTTTGCTATTTTATGTTGCACA 420 15 2135 Antisense
Sequence Source Affymetrix Proprietary Database