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[181171_at]

Description C31H2.1 /REP_DB=WormBase Gene ID /WP=CE27809 /TR=Q18344 /GB=AAA83335.2 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 08      6grp_total > 32      4grp_total > 52      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 175
1 2 3 4 range
A 212.6
(2.3)
P 		218.3
(3)
A 		209.5
(2)
A 		166.1
(-3)
A 		52
B 221.1
(0.6)
P 		276.5
(3)
P 		214.5
(0.3)
M 		136.3
(-3)
A 		140
C 216.1
(2.9)
P 		218
(3)
A 		185.8
(1.3)
A 		101.7
(-3)
A 		116
avr 216.6
(1.8) 		237.6
(3) 		203.3
(1) 		134.7
(-3) 		103

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 130
1 2 3 4 5 6 range
A 140.3
(-3)
A 		270
(3)
P 		162.2
(-2)
P 		169.2
(-1.7)
A 		257.8
(2.4)
P 		161.4
(-2)
P 		130
B 220.6
(2.5)
P 		177.6
(-1.5)
P 		206.5
(1.2)
M 		212.2
(1.7)
P 		226
(3)
P 		162.1
(-3)
A 		64
C 249.9
(2.7)
P 		161.2
(-2.4)
P 		255.4
(3)
P 		200
(-0.1)
P 		149.8
(-3)
P 		212.7
(0.6)
A 		106
avr 203.6
(1.6) 		202.9
(1.5) 		208
(2.4) 		193.8
(-0.2) 		211.2
(3) 		178.7
(-3) 		33
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 60
1 2 3 4 range
A 77.4
(3)
P 		47.4
(-0.4)
A 		54.8
(0.4)
A 		24.3
(-3)
A 		53
B 70.5
(3)
P 		68.3
(2.7)
P 		49.7
(-0)
M 		29.1
(-3)
A 		41
C 71.5
(3)
P 		62.7
(2)
A 		64.8
(2.3)
A 		17.1
(-3)
A 		54
avr 73.1
(3) 		59.5
(1.4) 		56.4
(1) 		23.5
(-3) 		50

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 70
1 2 3 4 5 6 range
A 25.9
(-3)
A 		96
(3)
P 		35.3
(-2.2)
P 		42.9
(-1.5)
A 		77.8
(1.4)
P 		39.3
(-1.9)
P 		70
B 76.7
(0.8)
P 		59.1
(-1.7)
P 		50.1
(-3)
M 		56.2
(-2.1)
P 		91.8
(3)
P 		60.4
(-1.5)
A 		42
C 92.6
(3)
P 		49.2
(-2)
P 		65
(-0.2)
P 		40.2
(-3)
P 		48.5
(-2)
P 		71.2
(0.5)
A 		52
avr 65.1
(1.3) 		68.1
(2) 		50.1
(-2.2) 		46.4
(-3) 		72.7
(3) 		57
(-0.6) 		26
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181171_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17217
Sequence Type Exemplar sequence
Representative Public ID C31H2.1 NCBI
Target Description C31H2.1 /REP_DB=WormBase Gene ID /WP=CE27809 /TR=Q18344 /GB=AAA83335.2 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171677, NM_171949
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000008501 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:5134279:5148773:1 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_171949 5/11 Cross Hyb Matching Probes None
NM_171677 3/11 Cross Hyb Matching Probes None
SNAP00000008493 3/11 Cross Hyb Matching Probes None
SNAP00000008494 3/11 Cross Hyb Matching Probes None
C31H2.1b 5/11 Cross Hyb Matching Probes A 
C31H2.1a 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:5138984-5148774(+) 98.78 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAM51524 Hypothetical protein C31H2.1b [Caenorhabditis elegans] ref|NP_741779.1| C31H2.1b [Caenorhabditis elegans] 0.0
blast AAA83335 Hypothetical protein C31H2.1a [Caenorhabditis elegans] ref|NP_741778.1| C31H2.1a [Caenorhabditis elegans] 0.0
blast CAE68698 Hypothetical protein CBG14616 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:181171_AT
ctggaggtcgtgatgcaattcgcattgacgaagaacttacccatggaattacgggtccaa
gctccacattcaacagcccccagctttgtgaagatgcgactgagcattcactctgcccaa
gcttttgtttatttccttcctcctgtgacgttctcttcccccaaatgtttacattcaacc
tctccccagttgtgttcctgtttacctttccaagttttttaaaaaataatttttatattt
tttggtacataccttcctcattcttaagtattgccaatattagtagttcacttattttct
acattccaacttctagtcaattcctcgtgtctgagagttttagtgctacggcaattgttt
attttttgctattttatgttgcacaaaattgtaatcagaagctcattccaactcctcgcc
tccaattttatgcagaaggcgagccagcatccaagcgacattgctcacaactttccgaga
aatcatcgagatattccaaaccatttaacggtcagctagaggagaagaacaaagtacaac
cagcgaaacgaaatgctccacaagacaactt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTGGAGGTCGTGATGCAATTCGCAT 255 241 1775 Antisense
GCATTGACGAAGAACTTACCCATGG 602 307 1796 Antisense
TGGAATTACGGGTCCAAGCTCCACA 434 545 1818 Antisense
GCCCCCAGCTTTGTGAAGATGCGAC 392 285 1850 Antisense
AGATGCGACTGAGCATTCACTCTGC 539 67 1866 Antisense
TCACTCTGCCCAAGCTTTTGTTTAT 248 627 1882 Antisense
CAAATGTTTACATTCAACCTCTCCC 554 193 1936 Antisense
CTCCTCGCCTCCAATTTTATGCAGA 477 235 2186 Antisense
GCAGAAGGCGAGCCAGCATCCAAGC 191 313 2206 Antisense
GCATCCAAGCGACATTGCTCACAAC 499 309 2221 Antisense
AACGAAATGCTCCACAAGACAACTT 563 141 2321 Antisense
Sequence Source Affymetrix Proprietary Database