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[181169_at]

Description T16G12.4 /REP_DB=WormBase Gene ID /WP=CE00582 /TR=Q22527 /GB=CAA82967.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 87      6grp_high1_10_10 > 88      6grp_highest_nonorm > 93      6grp_total > 78      4grp_total > 03      6grp_highest_sub > Da      6grp_high1_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 112
1 2 3 4 range
A 62.1
(-1.9)
M 		41.9
(-3)
A 		60.2
(-2)
A 		154
(3)
P 		112
B 44.7
(-3)
A 		62.7
(-2)
A 		61.3
(-2.1)
A 		151.2
(3)
P 		107
C 85.3
(-0.5)
P 		56.2
(-2.5)
A 		49.3
(-3)
A 		136.3
(3)
P 		87
avr 64
(-2.3) 		53.6
(-3) 		56.9
(-2.8) 		147.2
(3) 		94

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 768
1 2 3 4 5 6 range
A 162.9
(-2.2)
P 		113.3
(-2.7)
P 		77.4
(-3)
P 		124.8
(-2.6)
P 		411.8
(-0.1)
P 		758.5
(3)
P 		681
B 144
(-2.3)
P 		98.9
(-2.7)
P 		63
(-3)
P 		148.8
(-2.3)
P 		421.1
(-0.1)
P 		807.9
(3)
P 		745
C 130.2
(-2.7)
P 		98.4
(-2.9)
P 		91.3
(-3)
P 		200.6
(-2.1)
P 		349.9
(-0.9)
P 		831.3
(3)
P 		740
avr 145.7
(-2.4) 		103.5
(-2.8) 		77.2
(-3) 		158.1
(-2.3) 		394.3
(-0.4) 		799.2
(3) 		722
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 22.6
(3)
M 		9.1
(-3)
A 		15.7
(-0.1)
A 		22.5
(3)
P 		14
B 14.3
(-3)
A 		15.5
(-2.6)
A 		14.2
(-3)
A 		32.2
(3)
P 		18
C 28.2
(3)
P 		16.2
(-3)
A 		17.2
(-2.5)
A 		23
(0.4)
P 		12
avr 21.7
(1) 		13.6
(-3) 		15.7
(-2) 		25.9
(3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 286
1 2 3 4 5 6 range
A 30
(-2.5)
P 		40.3
(-2.2)
P 		16.9
(-3)
P 		31.6
(-2.5)
P 		124.3
(0.8)
P 		184.7
(3)
P 		168
B 50.1
(-2.3)
P 		32.9
(-2.6)
P 		15.3
(-3)
P 		39.4
(-2.5)
P 		171.1
(0.3)
P 		301.3
(3)
P 		286
C 48.3
(-2.4)
P 		30
(-2.8)
P 		23.2
(-3)
P 		40.3
(-2.6)
P 		113.2
(-0.9)
P 		278.3
(3)
P 		255
avr 42.8
(-2.4) 		34.4
(-2.6) 		18.5
(-3) 		37.1
(-2.5) 		136.2
(-0) 		254.8
(3) 		236
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181169_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6885
Sequence Type Exemplar sequence
Representative Public ID T16G12.4 NCBI
Target Description T16G12.4 /REP_DB=WormBase Gene ID /WP=CE00582 /TR=Q22527 /GB=CAA82967.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066831(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066831 NCBI Caenorhabditis elegans T16G12.4 (T16G12.4) mRNA, complete cds. 11/11 None
SNAP00000010167 ENSEMBL cdna:SNAP chromosome:CEL140:III:10057734:10058482:1 11/11 None
GENEFINDER00000010175 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:10057734:10058482:1 11/11 None
T16G12.4 ENSEMBL cdna:known chromosome:CEL140:III:10057734:10058482:1 gene:T16G12.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:10057729-10058478(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T16G12.4
Entrez Gene 188556 Entrez gene
SwissProt Q22527 EMBL-EBI
WormBase CE00582 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA82967 Hypothetical protein T16G12.4 [Caenorhabditis elegans] ref|NP_499232.1| T16G12.4 [Caenorhabditis elegans] 1.0E-117
blast CAE65055 Hypothetical protein CBG09900 [Caenorhabditis briggsae] 2.0E-55
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_499232.1 4 42-64,74-91,98-120,168-190
T16G12.4 4 42-64,74-91,98-120,168-190
SNAP00000010167 4 42-64,74-91,98-120,168-190
GENEFINDER00000010175 4 42-64,74-91,98-120,168-190
Sequence
Target Sequence 
>C. ELEGANS:181169_AT
acattatccgatcgcgttcaacgcttcgccccggggctggctcttcagattttcattctc
gccaagttttccttcgtcttctacttggcatttgaacgtccatggcacacaaaggaaact
ccatttgttctggtcacgctggctatcaatacaatcgtcttgatttctgccatcactcag
gacttttgcactttgattcttacctggatcatcacgtgctcccagctcattctctacgtc
tttctcctaatcgtcattccaatttttctcaccgattactttgcatcagaagctcaaaga
tacatgaattatccacacgaatggaaagtcttcaaagatttcatcaattacgagtcgagc
gaagagcgtcgtttcagacaagaaattgaatacggattcggtattgaaatggttctcgtc
tgcatggtctttgtgatcggagtccaattcgctctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACATTATCCGATCGCGTTCAACGCT 437 105 112 Antisense
GGCTCTTCAGATTTTCATTCTCGCC 584 539 150 Antisense
TGGCATTTGAACGTCCATGGCACAC 139 547 197 Antisense
AAACTCCATTTGTTCTGGTCACGCT 427 127 227 Antisense
GGTCACGCTGGCTATCAATACAATC 352 503 243 Antisense
ATTTCTGCCATCACTCAGGACTTTT 304 17 274 Antisense
GGACTTTTGCACTTTGATTCTTACC 344 525 291 Antisense
GATTCTTACCTGGATCATCACGTGC 273 431 306 Antisense
TCGTCATTCCAATTTTTCTCACCGA 697 603 362 Antisense
TCGTCTGCATGGTCTTTGTGATCGG 427 605 527 Antisense
TGTGATCGGAGTCCAATTCGCTCTT 82 557 543 Antisense
Sequence Source Affymetrix Proprietary Database