[Home] | [Total List]

[181168_at]

Description C34D4.2 /REP_DB=WormBase Gene ID /WP=CE06923 /TR=Q27475 /GB=AAB00704.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 88      4grp_total > 28      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 6.4
(-1)
A 		8.9
(0.4)
A 		2.8
(-3)
A 		13.5
(3)
A 		11
B 9
(1.3)
A 		10.7
(3)
A 		6.9
(-0.7)
A 		4.6
(-3)
A 		6
C 9.5
(-0.5)
A 		8.2
(-0.9)
A 		2.3
(-3)
A 		19.4
(3)
A 		17
avr 8.3
(0) 		9.3
(0.7) 		4
(-3) 		12.5
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 92
1 2 3 4 5 6 range
A 3.8
(-3)
A 		3.6
(-3)
A 		7.7
(-2.7)
A 		6.1
(-2.8)
A 		41.8
(-0.2)
A 		84.3
(3)
A 		81
B 7.4
(-2.7)
A 		7.1
(-2.8)
A 		3.5
(-3)
A 		7.5
(-2.7)
A 		24.2
(-1.6)
A 		95.4
(3)
A 		92
C 7.2
(-3)
A 		8.1
(-2.9)
A 		9.6
(-2.8)
A 		7.5
(-3)
A 		74.9
(1.6)
A 		95.6
(3)
A 		88
avr 6.1
(-3) 		6.3
(-3) 		6.9
(-2.9) 		7
(-2.9) 		47
(-0.1) 		91.8
(3) 		86
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3
1 2 3 4 range
A 2.3
(3)
A 		1.9
(1.5)
A 		0.7
(-3)
A 		2
(1.9)
A 		2
B 2.9
(3)
A 		2.6
(2.1)
A 		1.6
(-1.1)
A 		1
(-3)
A 		2
C 3.1
(2.5)
A 		2.4
(0.8)
A 		0.8
(-3)
A 		3.3
(3)
A 		3
avr 2.8
(3) 		2.3
(1.3) 		1
(-3) 		2.1
(0.7) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 0.7
(-3)
A 		1.3
(-2.8)
A 		1.7
(-2.7)
A 		1.6
(-2.7)
A 		12.6
(0.6)
A 		20.5
(3)
A 		20
B 2.6
(-2.7)
A 		2.4
(-2.7)
A 		0.8
(-3)
A 		2
(-2.8)
A 		9.8
(-1.4)
A 		35.6
(3)
A 		35
C 2.7
(-2.8)
A 		2.5
(-2.8)
A 		2.4
(-2.8)
A 		1.5
(-3)
A 		24.2
(1.5)
A 		32
(3)
A 		31
avr 2
(-2.9) 		2.1
(-2.9) 		1.6
(-3) 		1.7
(-3) 		15.5
(0) 		29.4
(3) 		28
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181168_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8471
Sequence Type Exemplar sequence
Representative Public ID C34D4.2 NCBI
Target Description C34D4.2 /REP_DB=WormBase Gene ID /WP=CE06923 /TR=Q27475 /GB=AAB00704.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068724(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068724 NCBI Caenorhabditis elegans C34D4.2 (C34D4.2) mRNA, complete cds. 11/11 None
SNAP00000003807 ENSEMBL cdna:SNAP chromosome:CEL140:IV:7154707:7155913:1 11/11 None
GENEFINDER00000003818 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:7154707:7155913:1 11/11 None
C34D4.2 ENSEMBL cdna:known chromosome:CEL140:IV:7154707:7156000:1 gene:C34D4.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7154712-7155919(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C34D4.2
Entrez Gene 177489 Entrez gene
SwissProt Q27475 EMBL-EBI
WormBase CE29211 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
16787 hydrolase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB00704 Hypothetical protein C34D4.2 [Caenorhabditis elegans] ref|NP_501125.1| C34D4.2 [Caenorhabditis elegans] 0.0
blast CAE67810 Hypothetical protein CBG13388 [Caenorhabditis briggsae] 1.0E-162
blast CAB01164 Hypothetical protein F23B12.1 [Caenorhabditis elegans] ref|NP_506574.1| F23B12.1 [Caenorhabditis elegans] 1.0E-141
Protein Domains
Database ID Description E-Value
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 5.3E-39
Sequence
Target Sequence 
>C. ELEGANS:181168_AT
gagtcgcccggttaacatgcaatacggattctttatggaatgccgtaaaagattttcaaa
tgctctctacgatgcgttccaactggcattctactgcatgccactttgtgcagtagtcag
cgacaagatcatctgtatgcatggcggaatttccgaggatttggtggatttgaggtttga
aatttcggcaatcaaggtttatgctcattattttggttacagacaacttgacaaagtcga
acgtccctgcgatgttcccgatattggcgtcattgctgacctgacatgggctgatccgga
tgccaccattcaaatgtacgccgagtcgcaacgtggagccggtcgtgtctttggagcaga
agcagtcaagaaattcctgaacacccatcatctcgaacttgtcgttcgtgcccatcaagt
cgtcatggatggctacgaattttttgctgatcggcaactcgtcaccatcttctcggcgcc
atcatactgtggacaaatggacaacgctgcggcagttatgactgtggatgaagaattggt
gtgttccttcactgtgatgcgtcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGTCGCCCGGTTAACATGCAATAC 261 401 432 Antisense
CAAATGCTCTCTACGATGCGTTCCA 278 193 488 Antisense
TGCGTTCCAACTGGCATTCTACTGC 170 581 504 Antisense
CATTCTACTGCATGCCACTTTGTGC 224 217 518 Antisense
TGACAAAGTCGAACGTCCCTGCGAT 619 571 660 Antisense
TGCGATGTTCCCGATATTGGCGTCA 609 583 679 Antisense
ATTGCTGACCTGACATGGGCTGATC 330 5 703 Antisense
ACCCATCATCTCGAACTTGTCGTTC 88 91 814 Antisense
TTTTGCTGATCGGCAACTCGTCACC 4 679 873 Antisense
TCGGCGCCATCATACTGTGGACAAA 484 607 904 Antisense
TGTGTTCCTTCACTGTGATGCGTCC 352 555 971 Antisense
Sequence Source Affymetrix Proprietary Database