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[181167_at]

Description ZC395.7 /REP_DB=WormBase Gene ID /WP=CE25662 /TR=Q9GYG4 /GB=AAG00041.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 54      6grp_high1_10_10 > 45      4grp_highest_8_8 > 01      4grp_high_8_8 > 45      6grp_highest_nonorm > 75      6grp_total > 46      4grp_total > 50      6grp_cgc > 35      6grp_cgc_sub > Cu      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 341
1 2 3 4 range
A 881.1
(0.4)
P 		1015.3
(2.8)
P 		1026.1
(3)
P 		685.6
(-3)
P 		341
B 756.9
(-3)
P 		1017
(3)
P 		875.3
(-0.3)
P 		1012.5
(2.9)
P 		260
C 931.5
(0.9)
P 		992.4
(2.5)
P 		1011.1
(3)
P 		785.5
(-3)
P 		226
avr 856.5
(-2) 		1008.2
(3) 		970.8
(1.8) 		827.9
(-3) 		180

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 530
1 2 3 4 5 6 range
A 974.3
(2.4)
P 		823.6
(-0.5)
P 		1007.2
(3)
P 		885.6
(0.7)
P 		694.9
(-3)
P 		738
(-2.2)
P 		312
B 934.1
(0.2)
P 		1061.4
(2.1)
P 		835.7
(-1.4)
P 		979.9
(0.9)
P 		732.1
(-3)
P 		1116.1
(3)
P 		384
C 769.8
(-0.3)
P 		1000.1
(3)
P 		850.5
(0.8)
P 		870.6
(1.1)
P 		586.3
(-3)
P 		881.4
(1.3)
P 		414
avr 892.7
(1.6) 		961.7
(3) 		897.8
(1.7) 		912
(2) 		671.1
(-3) 		911.8
(2) 		291
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 252
1 2 3 4 range
A 320.8
(3)
P 		220.4
(0.3)
P 		268.2
(1.6)
P 		100.4
(-3)
P 		220
B 241.4
(1.8)
P 		251.2
(3)
P 		202.8
(-3)
P 		215.8
(-1.4)
P 		48
C 308.4
(1.8)
P 		285.3
(1.2)
P 		352.4
(3)
P 		132.5
(-3)
P 		220
avr 290.2
(3) 		252.3
(1.4) 		274.5
(2.3) 		149.6
(-3) 		141

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 241
1 2 3 4 5 6 range
A 179.6
(-3)
P 		292.9
(3)
P 		219.4
(-0.9)
P 		224.6
(-0.6)
P 		209.7
(-1.4)
P 		179.7
(-3)
P 		113
B 325
(0.4)
P 		353.3
(1.2)
P 		202.9
(-3)
P 		259.5
(-1.4)
P 		297.5
(-0.3)
P 		416.2
(3)
P 		213
C 285.3
(2.1)
P 		305.2
(3)
P 		216.5
(-1.1)
P 		175.1
(-3)
P 		189.7
(-2.3)
P 		295.1
(2.5)
P 		130
avr 263.3
(-0.1) 		317.1
(3) 		212.9
(-3) 		219.7
(-2.6) 		232.3
(-1.9) 		297
(1.8) 		104
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181167_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6808
Sequence Type Exemplar sequence
Representative Public ID ZC395.7 NCBI
Target Description ZC395.7 /REP_DB=WormBase Gene ID /WP=CE25662 /TR=Q9GYG4 /GB=AAG00041.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065720(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065720 NCBI Caenorhabditis elegans yeast HAM (HydroxylAminoPurine sensitivity) related family member (hap-1) (hap-1) mRNA, complete cds. 11/11 None
SNAP00000016746 ENSEMBL cdna:SNAP chromosome:CEL140:III:5263906:5264859:1 11/11 None
GENEFINDER00000016758 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:5263906:5264859:1 10/11 None
ZC395.7 ENSEMBL cdna:known chromosome:CEL140:III:5263900:5264953:1 gene:ZC395.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5263904-5264858(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol hap-1
Ensembl ZC395.7
Entrez Gene 175724 Entrez gene
SwissProt Q9GYG4 EMBL-EBI
WormBase CE25662 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:254686_AT inosine triphosphate pyrophosphatase, putative / HAM1 family protein at
CANINE_2:CFA.21059.1.S1_S_AT similar to inosine triphosphatase isoform a cfa
DROSOPHILA_2:1625044_AT dm
DROSGENOME1:142851_AT dm
CHICKEN:GGA.9193.1.S1_S_AT inosine triphosphatase (nucleoside triphosphate pyrophosphatase) gga
HG-U133_PLUS_2:209171_AT inosine triphosphatase (nucleoside triphosphate pyrophosphatase) hs
HG-U133A_2:209171_AT inosine triphosphatase (nucleoside triphosphate pyrophosphatase) hs
HG-U133A:209171_AT inosine triphosphatase (nucleoside triphosphate pyrophosphatase) hs
HG-FOCUS:209171_AT inosine triphosphatase (nucleoside triphosphate pyrophosphatase) hs
HU35KSUBA:RC_AA496876_AT inosine triphosphatase (nucleoside triphosphate pyrophosphatase) hs
HU35KSUBD:RC_AA610004_S_AT inosine triphosphatase (nucleoside triphosphate pyrophosphatase) hs
U133_X3P:G13398327_3P_AT inosine triphosphatase (nucleoside triphosphate pyrophosphatase) hs
HG-U95AV2:35801_AT inosine triphosphatase (nucleoside triphosphate pyrophosphatase) hs
MU11KSUBA:AA028812_F_AT inosine triphosphatase (nucleoside triphosphate pyrophosphatase) mm
MG-U74AV2:93795_AT inosine triphosphatase (nucleoside triphosphate pyrophosphatase) mm
MOE430A:1416448_AT inosine triphosphatase (nucleoside triphosphate pyrophosphatase) mm
MOUSE430A_2:1416448_AT inosine triphosphatase (nucleoside triphosphate pyrophosphatase) mm
MOUSE430_2:1416448_AT inosine triphosphatase (nucleoside triphosphate pyrophosphatase) mm
MOE430B:1442353_AT Inosine triphosphatase (nucleoside triphosphate pyrophosphatase), mRNA (cDNA clone MGC:31641 IMAGE:4512398) mm
MOUSE430_2:1442353_AT Inosine triphosphatase (nucleoside triphosphate pyrophosphatase), mRNA (cDNA clone MGC:31641 IMAGE:4512398) mm
MU19KSUBA:TC15571_F_AT Inosine triphosphatase (nucleoside triphosphate pyrophosphatase), mRNA (cDNA clone MGC:31641 IMAGE:4512398) mm
RG-U34C:RC_AI175535_AT inosine triphosphatase (nucleoside triphosphate pyrophosphatase) rn
RAE230A:1372732_AT inosine triphosphatase (nucleoside triphosphate pyrophosphatase) rn
RAT230_2:1372732_AT inosine triphosphatase (nucleoside triphosphate pyrophosphatase) rn
Protein Similarities
Method ID Description E-Value
blast AAG00041 Yeast ham (hydroxylaminopurine sensitivity) related protein 1 [Caenorhabditis elegans] ref|NP_498121.1| yeast HAM (HydroxylAminoPurine sensitivity) related family member (hap-1) [Caenorhabditis elegans] gb|AAL14111.1| HAM-1-like protein [Caenorhabditis elegans] 1.0E-105
blast AAG00041 Yeast ham (hydroxylaminopurine sensitivity) related protein 1 [Caenorhabditis elegans] ref|NP_498121.1| yeast HAM (HydroxylAminoPurine sensitivity) related family member (hap-1) [Caenorhabditis elegans] gb|AAL14111.1| HAM-1-like protein [Caenorhabditis elegans] 1.0E-101
blast CAE73669 Hypothetical protein CBG21178 [Caenorhabditis briggsae] 1.0E-95
blast CAE73669 Hypothetical protein CBG21178 [Caenorhabditis briggsae] 2.0E-92
blast T27537 hypothetical protein ZC395.7 - Caenorhabditis elegans 4.0E-84
blast T27537 hypothetical protein ZC395.7 - Caenorhabditis elegans 1.0E-83
Protein Domains
Database ID Description E-Value
Pfam IPR002637 EMBL-EBI Ham1-like protein 1.1E-44
Pfam IPR002637 EMBL-EBI Ham1-like protein 4.1E-39
Sequence
Target Sequence 
>C. ELEGANS:181167_AT
gagaacccgaatttattgccgaaagaaagtgccgtgaggctgttgaagctgtaaaagggc
ccgttttggtcgaagacacaagtttatgcttcaacgcaatgggcggtcttcctggacctt
atatcaagtggtttttgaagaatttgaaaccagaaggactacataatatgctagccggat
tttctgacaaaaccgcctatgctcaatgcatctttgcgtacactgaaggactcggaaaac
ctattcatgtatttgctggaaaatgtcctggtcaaattgttgctccacgtggtgatactg
cttttggatgggatccatgcttccagccagatggttttaaagaaacattcggagaaatgg
ataaagatgtaaaaaatgaaatttctcatcgtgcaaaggctctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGAACCCGAATTTATTGCCGAAAG 475 389 131 Antisense
GTGCCGTGAGGCTGTTGAAGCTGTA 86 479 159 Antisense
GGCCCGTTTTGGTCGAAGACACAAG 690 539 188 Antisense
GCTTCAACGCAATGGGCGGTCTTCC 439 303 218 Antisense
GCGGTCTTCCTGGACCTTATATCAA 411 293 233 Antisense
GCCGGATTTTCTGACAAAACCGCCT 25 285 304 Antisense
GACAAAACCGCCTATGCTCAATGCA 119 367 316 Antisense
GCTCAATGCATCTTTGCGTACACTG 591 301 331 Antisense
GTGGTGATACTGCTTTTGGATGGGA 295 489 419 Antisense
ATCCATGCTTCCAGCCAGATGGTTT 354 39 443 Antisense
AATTTCTCATCGTGCAAAGGCTCTG 524 173 510 Antisense
Sequence Source Affymetrix Proprietary Database