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[181166_s_at]

Description F11A10.6 /REP_DB=WormBase Gene ID /WP=CE23643 /TR=Q9U3K1 /GB=CAB54220.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 18      6grp_high1_10_10 > 81      4grp_highest_8_8 > 02      4grp_high_8_8 > 46      6grp_highest_nonorm > 63      6grp_total > 81      4grp_total > 49      6grp_highest_sub > 04_05      6grp_high1_sub > 04      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 591
1 2 3 4 range
A 341.8
(-3)
P 		822.8
(3)
P 		637.5
(0.7)
P 		444.8
(-1.7)
P 		481
B 378.4
(-3)
P 		908
(3)
P 		841.6
(2.2)
P 		381.9
(-3)
P 		530
C 396.9
(-1.9)
P 		759.6
(3)
P 		727
(2.6)
P 		316.7
(-3)
P 		443
avr 372.4
(-3) 		830.1
(3) 		735.4
(1.8) 		381.1
(-2.9) 		458

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 332
1 2 3 4 5 6 range
A 586.1
(-0.6)
P 		550.1
(-1.6)
P 		503.4
(-3)
P 		596.6
(-0.3)
P 		708.7
(3)
P 		508.8
(-2.8)
P 		205
B 448.9
(-3)
P 		614.4
(0)
P 		578.9
(-0.6)
P 		774.9
(3)
P 		518
(-1.7)
P 		463.9
(-2.7)
P 		326
C 463
(-2.4)
P 		476.7
(-1.9)
P 		488
(-1.6)
P 		631.3
(3)
P 		536.9
(-0)
P 		442.6
(-3)
P 		189
avr 499.3
(-2.2) 		547.1
(-0.7) 		523.4
(-1.4) 		667.6
(3) 		587.9
(0.6) 		471.8
(-3) 		196
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 200
1 2 3 4 range
A 124.4
(0.1)
P 		178.6
(3)
P 		166.7
(2.4)
P 		65.1
(-3)
P 		114
B 120.7
(-1.3)
P 		224.3
(3)
P 		195
(1.8)
P 		81.4
(-3)
P 		143
C 131.4
(-0.7)
P 		218.4
(2)
P 		253.4
(3)
P 		53.4
(-3)
P 		200
avr 125.5
(-0.5) 		207.1
(3) 		205
(2.9) 		66.6
(-3) 		141

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 106
1 2 3 4 5 6 range
A 108
(-3)
P 		195.7
(2)
P 		109.6
(-2.9)
P 		151.3
(-0.5)
P 		213.8
(3)
P 		123.9
(-2.1)
P 		106
B 156.2
(-1.7)
P 		204.5
(2.5)
P 		140.6
(-3)
P 		205.3
(2.6)
P 		210.5
(3)
P 		173
(-0.2)
P 		70
C 171.6
(2.7)
P 		145.5
(-0.4)
P 		124.2
(-3)
P 		127
(-2.7)
P 		173.7
(3)
P 		148.2
(-0.1)
P 		50
avr 145.3
(-1.3) 		181.9
(1.6) 		124.8
(-3) 		161.2
(-0.1) 		199.3
(3) 		148.4
(-1.1) 		75
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 181166_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8457
Sequence Type Exemplar sequence
Representative Public ID F11A10.6 NCBI
Target Description F11A10.6 /REP_DB=WormBase Gene ID /WP=CE23643 /TR=Q9U3K1 /GB=CAB54220.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069891(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069891 NCBI Caenorhabditis elegans F11A10.6 (F11A10.6) mRNA, complete cds. 11/11 None
SNAP00000006203 ENSEMBL cdna:SNAP chromosome:CEL140:IV:12087218:12088992:-1 11/11 None
GENEFINDER00000006210 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:12087218:12088992:-1 11/11 None
F11A10.6 ENSEMBL cdna:known chromosome:CEL140:IV:12087019:12089051:-1 gene:F11A10.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12087223-12088998(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F11A10.6
Entrez Gene 178149 Entrez gene
SwissProt Q9U3K1 EMBL-EBI
WormBase CE23643 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:258638_AT rhomboid protein-related at
CANINE_2:CFA.19221.1.S1_AT similar to PL6 protein (Placental protein 6) (PP6) cfa
CANINE_2:CFAAFFX.16535.1.S1_S_AT similar to PL6 protein (Placental protein 6) (PP6) cfa
DROSOPHILA_2:1632301_AT dm
DROSGENOME1:141272_AT dm
HG-U133_PLUS_2:216267_S_AT placental protein 6 hs
HG-U133A_2:216267_S_AT placental protein 6 hs
HG-U133A:216267_S_AT placental protein 6 hs
HU35KSUBA:RC_AA456583_S_AT placental protein 6 hs
HUGENEFL:U09584_AT placental protein 6 hs
U133_X3P:HS.91566.1.S1_3P_A_AT placental protein 6 hs
HG-U95AV2:38274_AT placental protein 6 hs
MU11KSUBA:AA261047_S_AT expressed sequence C78915 mm
MG-U74AV2:94990_AT expressed sequence C78915 mm
MOE430A:1448567_AT expressed sequence C78915 mm
MOUSE430A_2:1448567_AT expressed sequence C78915 mm
MOUSE430_2:1448567_AT expressed sequence C78915 mm
MU19KSUBA:TC20713_AT Expressed sequence C78915, mRNA (cDNA clone MGC:28463 IMAGE:4161444) mm
RG-U34B:RC_AA925160_AT similar to PL6 protein (predicted) rn
RG-U34B:RC_AA944530_G_AT similar to PL6 protein (predicted) rn
RG-U34B:RC_AA944530_AT similar to PL6 protein (predicted) rn
RAE230A:1372894_AT similar to PL6 protein (predicted) rn
RAT230_2:1372894_AT similar to PL6 protein (predicted) rn
Protein Similarities
Method ID Description E-Value
blast CAB54220 Hypothetical protein F11A10.6 [Caenorhabditis elegans] ref|NP_502292.1| F11A10.6 [Caenorhabditis elegans] 0.0
blast CAE62178 Hypothetical protein CBG06225 [Caenorhabditis briggsae] 1.0E-176
blast XP_392569 PREDICTED: similar to ENSANGP00000018642 [Apis mellifera] 7.0E-26
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502292.1 4 25-47,106-128,133-152,172-194
F11A10.6 4 25-47,106-128,133-152,172-194
SNAP00000006203 4 25-47,106-128,133-152,172-194
GENEFINDER00000006210 4 25-47,106-128,133-152,172-194
Sequence
Target Sequence 
>C. ELEGANS:181166_S_AT
ttaaatatgctcaccttccattcttggccatatttgtctcatttattctagctctcacca
aatttacttactttgtgtcatttctccaaatcaccatcggtgttcaagtttcttggacct
atcttcgcttctacaaaccccatgaaactgacgaaatctatggagacggcagtgagcact
tcacgtgggccagcctcttcccgtctcgcactcaactcttcttcactctcattggaaaag
tttgcttcagaacccttgctcgaatgggcgtctgcaaacgacaagttcgtcatgttgatc
ttcactctctacaatcaggatccgttggaatcaacttgcctgcgctggagaattctgcaa
aagactcggagagacggagacaaaaagcattgaaagagttgaacgatcgattgaacaaga
ctcgaacagcagaagttgccagctacggaaactgggacgatggtgacgatgatgagccga
ctgaggttactgtagttgctccgcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTAAATATGCTCACCTTCCATTCTT 689 681 521 Antisense
CATTCTTGGCCATATTTGTCTCATT 677 215 539 Antisense
TTGTCTCATTTATTCTAGCTCTCAC 53 709 554 Antisense
TCAAGTTTCTTGGACCTATCTTCGC 285 633 624 Antisense
TTCGCTTCTACAAACCCCATGAAAC 450 693 644 Antisense
AAAGTTTGCTTCAGAACCCTTGCTC 17 71 757 Antisense
AACCCTTGCTCGAATGGGCGTCTGC 683 141 771 Antisense
AGTTCGTCATGTTGATCTTCACTCT 106 65 804 Antisense
TTCACTCTCTACAATCAGGATCCGT 579 685 821 Antisense
ACTTGCCTGCGCTGGAGAATTCTGC 158 105 854 Antisense
CTGAGGTTACTGTAGTTGCTCCGCC 245 239 1001 Antisense
Sequence Source Affymetrix Proprietary Database