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[181165_at]

Description B0507.7 /REP_DB=WormBase Gene ID /WP=CE07766 /TR=Q22881 /GB=AAB04817.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 82      4grp_total > 09      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 64
1 2 3 4 range
A 0.8
(-3)
A 		17.4
(3)
A 		3.9
(-1.9)
A 		3.6
(-2)
A 		17
B 4
(-2.8)
A 		3.5
(-3)
A 		5.3
(-2.2)
A 		17.1
(3)
A 		14
C 3.3
(-3)
A 		3.1
(-3)
A 		9.1
(-2.4)
A 		64.9
(3)
A 		62
avr 2.7
(-3) 		8
(-1.8) 		6.1
(-2.2) 		28.5
(3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 4.6
(-2.6)
A 		28.6
(3)
A 		7.1
(-2)
A 		21.3
(1.3)
A 		25.7
(2.3)
M 		2.9
(-3)
A 		26
B 1.5
(-3)
A 		16.3
(-0.8)
A 		2.5
(-2.9)
A 		42.3
(3)
P 		13.6
(-1.2)
A 		18.5
(-0.5)
A 		41
C 18.3
(0.5)
A 		5.3
(-2.9)
A 		27.5
(3)
A 		8.6
(-2)
A 		24.4
(2.2)
A 		5
(-3)
A 		23
avr 8.1
(-3) 		16.7
(0.2) 		12.4
(-1.4) 		24.1
(3) 		21.2
(1.9) 		8.8
(-2.7) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 0.3
(-3)
A 		3.8
(3)
A 		1
(-1.8)
A 		0.5
(-2.7)
A 		4
B 1.3
(-2.1)
A 		0.9
(-3)
A 		1.2
(-2.4)
A 		3.7
(3)
A 		3
C 1.1
(-2.9)
A 		0.9
(-3)
A 		3.2
(-1.6)
A 		11
(3)
A 		10
avr 0.9
(-3) 		1.9
(-1.6) 		1.8
(-1.7) 		5.1
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 0.9
(-2.9)
A 		10.2
(3)
A 		1.6
(-2.4)
A 		5.4
(-0)
A 		7.8
(1.5)
M 		0.7
(-3)
A 		10
B 0.5
(-3)
A 		5.4
(-0.3)
A 		0.6
(-2.9)
A 		11.2
(3)
P 		5.5
(-0.2)
A 		6.9
(0.6)
A 		11
C 6.8
(2)
A 		1.6
(-3)
A 		7
(2.1)
A 		1.7
(-2.9)
A 		7.9
(3)
A 		1.7
(-2.9)
A 		6
avr 2.7
(-3) 		5.7
(1.1) 		3.1
(-2.5) 		6.1
(1.6) 		7.1
(3) 		3.1
(-2.5) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181165_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11598
Sequence Type Exemplar sequence
Representative Public ID B0507.7 NCBI
Target Description B0507.7 /REP_DB=WormBase Gene ID /WP=CE07766 /TR=Q22881 /GB=AAB04817.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072855(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072855 NCBI Caenorhabditis elegans B0507.7 (B0507.7) mRNA, complete cds. 11/11 None
SNAP00000006054 ENSEMBL cdna:SNAP chromosome:CEL140:V:8758485:8759445:-1 11/11 None
GENEFINDER00000006069 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:8758485:8761295:-1 11/11 None
B0507.7 ENSEMBL cdna:known chromosome:CEL140:V:8758485:8760919:-1 gene:B0507.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8758485-8760920(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl B0507.7
Entrez Gene 182014 Entrez gene
SwissProt Q22881 EMBL-EBI
WormBase CE07766 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB04817 Hypothetical protein B0507.7 [Caenorhabditis elegans] ref|NP_505256.1| B0507.7 [Caenorhabditis elegans] 0.0
blast AAB04817 Hypothetical protein B0507.7 [Caenorhabditis elegans] ref|NP_505256.1| B0507.7 [Caenorhabditis elegans] 1.0E-119
blast AAK95860 Hypothetical protein B0507.10 [Caenorhabditis elegans] ref|NP_505257.1| B0507.10 [Caenorhabditis elegans] 3.0E-42
blast T25469 hypothetical protein B0507.8 - Caenorhabditis elegans 3.0E-42
blast AAK95860 Hypothetical protein B0507.10 [Caenorhabditis elegans] ref|NP_505257.1| B0507.10 [Caenorhabditis elegans] 2.0E-34
blast T25469 hypothetical protein B0507.8 - Caenorhabditis elegans 2.0E-34
Sequence
Target Sequence 
>C. ELEGANS:181165_AT
gagcacaaactcgaactggcaaatgggctgtcaaaatatgcggataaaaatcaaaaaatt
ctcaatttgaatcaagaacttcatcacacaatcctcgatggagagaatcgtcttggacac
atcaatgaagatagatttgaagatcaaaaaaatcaattagagaagcaagatgacacttgt
tttgtttcaaaaaatcataggcgaatgaggataggagaagcgctcttagatactgaaatg
gacgatttattgagcgctttgagagttttctaccaacatgctactgaattcaatgcagat
ggatcaacggatgttcaagtttttacacaactaattggagaagttatcggaaccgttgag
gaattaagaacagaaatgagtgaactgatatcaacgcttgaaatgtttgaagaagaaggt
tgtactgccactgaacaagggatcggatcagagtttatttatgttgatgataggatgaaa
cagttaagtgagcttattcaaaagtttgatgtggctgagcgtgattatatacaagagaca
ctttctcgtcaaatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGCACAAACTCGAACTGGCAAATG 349 389 532 Antisense
AGAACTTCATCACACAATCCTCGAT 618 73 606 Antisense
GAGAGAATCGTCTTGGACACATCAA 469 395 632 Antisense
GGAGAAGCGCTCTTAGATACTGAAA 349 519 745 Antisense
AATGGACGATTTATTGAGCGCTTTG 478 161 768 Antisense
GAGCGCTTTGAGAGTTTTCTACCAA 522 377 783 Antisense
TCTACCAACATGCTACTGAATTCAA 157 611 800 Antisense
GAGTGAACTGATATCAACGCTTGAA 538 401 909 Antisense
GAAGAAGGTTGTACTGCCACTGAAC 116 341 943 Antisense
CTGCCACTGAACAAGGGATCGGATC 83 235 956 Antisense
ACAAGAGACACTTTCTCGTCAAATG 153 113 1062 Antisense
Sequence Source Affymetrix Proprietary Database