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[181164_at]

Description C37H5.3 /REP_DB=WormBase Gene ID /WP=CE08627 /TR=P91141 /GB=AAB42367.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 73      6grp_high1_10_10 > 37      4grp_highest_8_8 > 23      4grp_high_8_8 > 06      6grp_highest_nonorm > 81      6grp_total > 46      4grp_total > 02      6grp_highest_sub > Cu      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 687
1 2 3 4 range
A 274.5
(-2.9)
P 		260
(-3)
P 		271.1
(-2.9)
P 		947
(3)
P 		687
B 305.5
(-2.9)
P 		294.5
(-3)
P 		306.4
(-2.9)
P 		824.9
(3)
P 		530
C 318.9
(-2.5)
P 		301.2
(-2.7)
P 		266.9
(-3)
P 		920.1
(3)
P 		653
avr 299.6
(-2.8) 		285.2
(-3) 		281.5
(-3) 		897.3
(3) 		616

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 226
1 2 3 4 5 6 range
A 422.2
(3)
P 		278.5
(-0.8)
P 		342.5
(0.9)
P 		239.1
(-1.9)
P 		196.5
(-3)
P 		421.5
(3)
P 		226
B 385.7
(3)
P 		243.1
(-2.3)
P 		268.6
(-1.4)
P 		241
(-2.4)
P 		224.3
(-3)
P 		308.5
(0.1)
P 		161
C 381.2
(3)
P 		330.1
(1.2)
P 		332.1
(1.3)
P 		262.1
(-1.2)
P 		212.7
(-3)
P 		326.1
(1)
P 		169
avr 396.4
(3) 		283.9
(-0.6) 		314.4
(0.3) 		247.4
(-1.8) 		211.2
(-3) 		352
(1.6) 		185
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 119
1 2 3 4 range
A 99.9
(0.2)
P 		56.4
(-3)
P 		70.9
(-1.9)
P 		138.6
(3)
P 		82
B 97.4
(-1.5)
P 		72.7
(-2.9)
P 		71
(-3)
P 		175.8
(3)
P 		105
C 105.6
(-1.3)
P 		86.6
(-3)
P 		93
(-2.4)
P 		155.1
(3)
P 		69
avr 101
(-0.9) 		71.9
(-3) 		78.3
(-2.5) 		156.5
(3) 		85

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 89
1 2 3 4 5 6 range
A 77.8
(-0.4)
P 		99
(2.5)
P 		74.6
(-0.9)
P 		60.6
(-2.8)
P 		59.3
(-3)
P 		102.6
(3)
P 		43
B 134.2
(3)
P 		80.9
(-1.5)
P 		65.2
(-2.9)
P 		63.8
(-3)
P 		91.1
(-0.7)
P 		115
(1.4)
P 		70
C 141.3
(3)
P 		100.7
(0.3)
P 		84.5
(-0.8)
P 		52.7
(-3)
P 		68.8
(-1.9)
P 		109.2
(0.8)
P 		89
avr 117.8
(3) 		93.5
(0.5) 		74.8
(-1.4) 		59
(-3) 		73.1
(-1.6) 		108.9
(2.1) 		59
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181164_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15703
Sequence Type Exemplar sequence
Representative Public ID C37H5.3 NCBI
Target Description C37H5.3 /REP_DB=WormBase Gene ID /WP=CE08627 /TR=P91141 /GB=AAB42367.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071896(11), NM_182378(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071896 NCBI Caenorhabditis elegans C37H5.3a (C37H5.3) mRNA, complete cds. 11/11 None
NM_182378 NCBI Caenorhabditis elegans C37H5.3b (C37H5.3) mRNA, complete cds. 11/11 None
SNAP00000016589 ENSEMBL cdna:SNAP chromosome:CEL140:V:4844607:4849450:1 11/11 None
GENEFINDER00000016598 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:4844499:4846684:1 11/11 None
C37H5.3a ENSEMBL cdna:known chromosome:CEL140:V:4844499:4846702:1 gene:C37H5.3 11/11 None
C37H5.3b ENSEMBL cdna:known chromosome:CEL140:V:4844937:4846684:1 gene:C37H5.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4844498-4846684(+) 100.0 100.0
Public Domain and Genome References
Ensembl C37H5.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB42367 Hypothetical protein C37H5.3a [Caenorhabditis elegans] ref|NP_504297.1| C37H5.3a [Caenorhabditis elegans] 0.0
blast AAN84844 Hypothetical protein C37H5.3b [Caenorhabditis elegans] ref|NP_872178.1| C37H5.3b [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000073 EMBL-EBI Alpha/beta hydrolase fold 3.0E-25
Pfam IPR000073 EMBL-EBI Alpha/beta hydrolase fold 3.0E-25
Pfam IPR000073 EMBL-EBI Alpha/beta hydrolase fold 3.0E-25
Pfam IPR000073 EMBL-EBI Alpha/beta hydrolase fold 1.5E-19
Sequence
Target Sequence 
>C. ELEGANS:181164_AT
cacatcctacgctctgaagtatcctaaaagagtcgagaatctcatacttgccgatccttg
gggcttcaatgagatggatccagaattcgcgcaaaaactcactagtcgtcagaaaaacat
tttttgggtcattcaacagttcaatccactggcggttctgagacttgttggaggatatgg
accatctctcgtgagacgtcttcgtccagatcttgcactgaagtactctgaagacgtgta
tgactacatttacttggcaaactccagggatccaacgggagaagaggttttcaagtgttt
atcggaaaacttgggatgggctaagcaaccaatgagcaagaggttccacgaacttgacaa
caccgttccagtcacatttattcacggagagcgcagttggattgactggagaacaacgag
aagattgttcggagagctcgagcacgtcgagtcacatatcatggacagtgctggtcatca
tgtctacgcaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CACATCCTACGCTCTGAAGTATCCT 352 195 744 Antisense
CGAGAATCTCATACTTGCCGATCCT 347 251 777 Antisense
TGCCGATCCTTGGGGCTTCAATGAG 490 577 792 Antisense
GAGATGGATCCAGAATTCGCGCAAA 665 395 814 Antisense
GTTCAATCCACTGGCGGTTCTGAGA 368 445 882 Antisense
ATCTCTCGTGAGACGTCTTCGTCCA 202 33 927 Antisense
GGTTCCACGAACTTGACAACACCGT 350 507 1085 Antisense
CACCGTTCCAGTCACATTTATTCAC 675 199 1104 Antisense
TGTTCGGAGAGCTCGAGCACGTCGA 655 561 1169 Antisense
GAGCACGTCGAGTCACATATCATGG 600 389 1183 Antisense
GTGCTGGTCATCATGTCTACGCAGA 308 479 1211 Antisense
Sequence Source Affymetrix Proprietary Database