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[181162_s_at]

Description T03F1.1 /REP_DB=WormBase Gene ID /WP=CE13096 /TR=P91430 /GB=AAB42231.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 79      6grp_high1_10_10 > 98      4grp_highest_8_8 > 18      4grp_high_8_8 > 62      6grp_highest_nonorm > 73      6grp_total > 96      4grp_total > 56      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 879
1 2 3 4 range
A 677.8
(-0.9)
P 		804.9
(0.1)
P 		1192.7
(3)
P 		396.5
(-3)
P 		796
B 622.1
(-1.5)
P 		1045.8
(2.1)
P 		1157.1
(3)
P 		436.4
(-3)
P 		721
C 675.6
(-1.2)
P 		926.6
(0.6)
P 		1275.6
(3)
P 		408.6
(-3)
P 		867
avr 658.5
(-1.2) 		925.8
(0.9) 		1208.5
(3) 		413.8
(-3) 		795

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 325
1 2 3 4 5 6 range
A 369.9
(-3)
P 		450.3
(-1.5)
P 		528.4
(-0.1)
P 		429.3
(-1.9)
P 		694.4
(3)
P 		663.8
(2.4)
P 		325
B 547.6
(0.6)
P 		391.5
(-3)
P 		449.7
(-1.7)
P 		575.2
(1.2)
P 		546.5
(0.5)
P 		653.5
(3)
P 		262
C 481.2
(0)
P 		370.1
(-3)
P 		536.8
(1.5)
P 		501.2
(0.5)
P 		585
(2.8)
P 		591.8
(3)
P 		222
avr 466.2
(-1.4) 		404
(-3) 		505
(-0.4) 		501.9
(-0.5) 		608.6
(2.3) 		636.4
(3) 		232
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 387
1 2 3 4 range
A 246.8
(1.5)
P 		174.7
(-0.2)
P 		311.8
(3)
P 		58
(-3)
P 		254
B 198.4
(0.6)
P 		258.3
(2.7)
P 		268.1
(3)
P 		93
(-3)
P 		175
C 223.7
(-0.5)
P 		266.4
(0.2)
P 		444.6
(3)
P 		68.9
(-3)
P 		376
avr 223
(0.3) 		233.1
(0.6) 		341.5
(3) 		73.3
(-3) 		268

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 176
1 2 3 4 5 6 range
A 68.2
(-3)
P 		160.2
(0.9)
P 		115.1
(-1)
P 		108.9
(-1.3)
P 		209.5
(3)
P 		161.6
(1)
P 		141
B 190.5
(0.6)
P 		130.3
(-2.1)
P 		109.2
(-3)
P 		152.4
(-1.1)
P 		222
(2)
P 		243.7
(3)
P 		135
C 178.4
(1.8)
P 		112.9
(-2.3)
P 		136.6
(-0.8)
P 		100.8
(-3)
P 		189.3
(2.5)
P 		198.1
(3)
P 		97
avr 145.7
(-1.2) 		134.5
(-2) 		120.3
(-3) 		120.7
(-3) 		206.9
(3) 		201.1
(2.6) 		87
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 181162_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.210
Sequence Type Exemplar sequence
Representative Public ID T03F1.1 NCBI
Target Description T03F1.1 /REP_DB=WormBase Gene ID /WP=CE13096 /TR=P91430 /GB=AAB42231.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058847(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058847 NCBI Caenorhabditis elegans T03F1.1 (T03F1.1) mRNA, complete cds. 11/11 None
SNAP00000013121 ENSEMBL cdna:SNAP chromosome:CEL140:I:3874373:3875729:1 11/11 None
GENEFINDER00000013130 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:3874373:3875729:1 11/11 None
T03F1.1 ENSEMBL cdna:known chromosome:CEL140:I:3874251:3875980:1 gene:T03F1.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:3874372-3875729(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T03F1.1
Entrez Gene 171968 Entrez gene
SwissProt P91430 EMBL-EBI
WormBase CE13096 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:264570_AT thiF family protein at
ATGENOME1:15782_AT thiF family protein at
CANINE_2:CFAAFFX.10573.1.S1_AT similar to ubiquitin-activating enzyme E1-domain containing 1 isoform 1 cfa
DROSOPHILA_2:1633923_AT dm
DROSGENOME1:144879_AT dm
CHICKEN:GGAAFFX.21815.1.S1_AT ubiquitin-activating enzyme E1-domain containing 1 gga
CHICKEN:GGAAFFX.21815.1.S1_S_AT ubiquitin-activating enzyme E1-domain containing 1 gga
HG-U133_PLUS_2:218289_S_AT ubiquitin-activating enzyme E1-domain containing 1 hs
HG-U133A_2:218289_S_AT ubiquitin-activating enzyme E1-domain containing 1 hs
HG-U133A:218289_S_AT ubiquitin-activating enzyme E1-domain containing 1 hs
HU35KSUBA:RC_AA446943_AT ubiquitin-activating enzyme E1-domain containing 1 hs
HU35KSUBD:RC_AA252141_AT ubiquitin-activating enzyme E1-domain containing 1 hs
HU35KSUBD:RC_R68820_AT ubiquitin-activating enzyme E1-domain containing 1 hs
U133_X3P:G13376211_3P_A_AT ubiquitin-activating enzyme E1-domain containing 1 hs
U133_X3P:HS.170737.0.A3_3P_AT ubiquitin-activating enzyme E1-domain containing 1 hs
U133_X3P:HS.170737.0.A1_3P_A_AT ubiquitin-activating enzyme E1-domain containing 1 hs
HG-U133_PLUS_2:222578_S_AT ubiquitin-activating enzyme E1-domain containing 1 hs
HG-U133B:222578_S_AT ubiquitin-activating enzyme E1-domain containing 1 hs
HG-U133_PLUS_2:222579_AT ubiquitin-activating enzyme E1-domain containing 1 hs
HG-U133B:222579_AT ubiquitin-activating enzyme E1-domain containing 1 hs
HG-U95B:54752_AT ubiquitin-activating enzyme E1-domain containing 1 hs
HG-U95B:54753_AT ubiquitin-activating enzyme E1-domain containing 1 hs
HU35KSUBD:RC_AA453036_AT Ubiquitin-activating enzyme E1-domain containing 1 hs
HG-U95B:46760_R_AT Ubiquitin-activating enzyme E1-domain containing 1 hs
HU35KSUBD:RC_H38110_AT Ubiquitin-activating enzyme E1-domain containing 1 hs
MG-U74AV2:102812_I_AT ubiquitin-activating enzyme E1-domain containing 1 mm
MG-U74AV2:102813_F_AT ubiquitin-activating enzyme E1-domain containing 1 mm
MG-U74BV2:108973_AT ubiquitin-activating enzyme E1-domain containing 1 mm
MG-U74BV2:164968_I_AT ubiquitin-activating enzyme E1-domain containing 1 mm
MG-U74BV2:164554_I_AT ubiquitin-activating enzyme E1-domain containing 1 mm
MOE430A:1451973_AT ubiquitin-activating enzyme E1-domain containing 1 mm
MOUSE430A_2:1451973_AT ubiquitin-activating enzyme E1-domain containing 1 mm
MOUSE430_2:1451973_AT ubiquitin-activating enzyme E1-domain containing 1 mm
MOE430B:1435247_AT ubiquitin-activating enzyme E1-domain containing 1 mm
MOUSE430_2:1435247_AT ubiquitin-activating enzyme E1-domain containing 1 mm
MU19KSUBB:TC31058_AT Ubiquitin-activating enzyme E1-domain containing 1 (Ube1dc1), mRNA mm
MU19KSUBC:TC40874_AT Ubiquitin-activating enzyme E1-domain containing 1 (Ube1dc1), mRNA mm
RG-U34C:AA848354_AT ubiquitin-activating enzyme E1-domain containing 1 (predicted) rn
RAE230A:1372120_AT ubiquitin-activating enzyme E1-domain containing 1 (predicted) rn
RAT230_2:1372120_AT ubiquitin-activating enzyme E1-domain containing 1 (predicted) rn
RAE230A:1372119_AT ubiquitin-activating enzyme E1-domain containing 1 (predicted) rn
RAT230_2:1372119_AT ubiquitin-activating enzyme E1-domain containing 1 (predicted) rn
RG-U34B:RC_AI043630_AT Ubiquitin-activating enzyme E1-domain containing 1 (predicted) rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6564 L-serine biosynthesis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3824 catalytic activity inferred from electronic annotation QuickGO AmiGO
16616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_491248 T03F1.1 [Caenorhabditis elegans] gb|AAB42231.1| Hypothetical protein T03F1.1 [Caenorhabditis elegans] 0.0
blast CAE66640 Hypothetical protein CBG11977 [Caenorhabditis briggsae] 1.0E-160
blast AAI06419 Unknown (protein for MGC:131082) [Xenopus laevis] 1.0E-119
Protein Domains
Database ID Description E-Value
Pfam IPR000594 EMBL-EBI UBA/THIF-type NAD/FAD binding fold 1.6E-44
Sequence
Target Sequence 
>C. ELEGANS:181162_S_AT
gagaatgccgtgtccggccatattcagtatatcgaaccaggaaagacggcgtgttttgct
tgtgttcctccactcgttgtcgcttcgggaattgacgagcgtacgttgaaacgcgatgga
gtgtgtgctgcgtcacttccaacaacaatggctgtagttgctggatttttggtgatgaac
acgctgaaataccttctgaactttggagaagtctcccagtacgttggatacaacgcatta
tcagactttttccctcgtgacagcatcaagccgaacccatactgcgacgactctcactgt
ctgcaaagacaaaaagaatacgaagagaaggttgccaatcaacctgtggatcttgaagtg
gaagttccagaagaagaaaccgtcgttcatgaggacaatgaatggggaatcgagctggta
aatgagtcggagccatctgcagaacaatcttcaagcttgaatgctggaaccgggctcaag
tttgcttatgaaccaatcaagagagatgcccagactgaattgtcgccggctcaagctgca
acccatgatttta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGAATGCCGTGTCCGGCCATATTC 506 391 667 Antisense
ACTCGTTGTCGCTTCGGGAATTGAC 680 93 738 Antisense
GATGGAGTGTGTGCTGCGTCACTTC 636 405 781 Antisense
GAACACGCTGAAATACCTTCTGAAC 703 351 843 Antisense
GGAGAAGTCTCCCAGTACGTTGGAT 502 517 871 Antisense
AACGCATTATCAGACTTTTTCCCTC 585 145 898 Antisense
TCCCTCGTGACAGCATCAAGCCGAA 575 597 917 Antisense
GAGCCATCTGCAGAACAATCTTCAA 421 385 1096 Antisense
CTGGAACCGGGCTCAAGTTTGCTTA 528 241 1130 Antisense
TGCCCAGACTGAATTGTCGCCGGCT 119 583 1173 Antisense
GCTCAAGCTGCAACCCATGATTTTA 460 301 1195 Antisense
Sequence Source Affymetrix Proprietary Database