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[181161_at]

Description D2021.2 /REP_DB=WormBase Gene ID /WP=CE02583 /TR=Q09520 /GB=AAB36863.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 90      6grp_high1_10_10 > 09      4grp_highest_8_8 > 07      4grp_high_8_8 > 21      6grp_highest_nonorm > 73      6grp_total > 29      4grp_total > 26      6grp_cgc > 02      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 533
1 2 3 4 range
A 497.8
(-3)
P 		623
(-0.8)
P 		589.7
(-1.4)
P 		839.9
(3)
P 		342
B 448.8
(-2.9)
P 		645.2
(-0.7)
P 		440
(-3)
P 		972.8
(3)
P 		533
C 498.1
(-3)
P 		769.5
(1.6)
P 		574.4
(-1.7)
P 		852
(3)
P 		354
avr 481.6
(-3) 		679.2
(-0.1) 		534.7
(-2.2) 		888.2
(3) 		407

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 275
1 2 3 4 5 6 range
A 656.1
(3)
P 		505
(-0.3)
P 		380.8
(-3)
P 		470.4
(-1)
P 		583
(1.4)
P 		475.1
(-0.9)
P 		275
B 543.9
(1.5)
P 		592.2
(3)
P 		400.2
(-3)
P 		557.3
(1.9)
P 		478.7
(-0.5)
P 		427.3
(-2.2)
P 		192
C 540.4
(0.3)
P 		588
(1.6)
P 		426.6
(-3)
P 		513.8
(-0.5)
P 		635.2
(3)
P 		431.5
(-2.9)
P 		209
avr 580.1
(3) 		561.7
(2.4) 		402.5
(-3) 		513.8
(0.8) 		565.6
(2.5) 		444.6
(-1.6) 		178
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 119
1 2 3 4 range
A 181.3
(3)
P 		135.2
(-1.7)
P 		154.2
(0.2)
P 		122.9
(-3)
P 		58
B 143.1
(-0.7)
P 		159.4
(0.3)
P 		102
(-3)
P 		207.3
(3)
P 		105
C 164.9
(-1.4)
P 		221.2
(3)
P 		200.2
(1.4)
P 		143.7
(-3)
P 		78
avr 163.1
(0.3) 		171.9
(3) 		152.1
(-3) 		158
(-1.2) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 123
1 2 3 4 5 6 range
A 121
(-0.6)
P 		179.6
(3)
P 		82.9
(-3)
P 		119.3
(-0.7)
P 		175.9
(2.8)
P 		115.7
(-1)
P 		97
B 189.3
(2.5)
P 		197.1
(3)
P 		97.2
(-3)
P 		147.6
(0)
P 		194.5
(2.8)
P 		159.3
(0.7)
P 		100
C 200.3
(2.7)
P 		179.4
(1.5)
P 		108.6
(-2.7)
P 		103.3
(-3)
P 		205.5
(3)
P 		144.4
(-0.6)
P 		102
avr 170.2
(1.6) 		185.4
(2.6) 		96.2
(-3) 		123.4
(-1.3) 		192
(3) 		139.8
(-0.3) 		96
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181161_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16969
Sequence Type Exemplar sequence
Representative Public ID D2021.2 NCBI
Target Description D2021.2 /REP_DB=WormBase Gene ID /WP=CE02583 /TR=Q09520 /GB=AAB36863.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029343(11), NM_001029344(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029343 NCBI Caenorhabditis elegans D2021.2a (D2021.2) mRNA, complete cds. 11/11 None
NM_001029344 NCBI Caenorhabditis elegans D2021.2b (D2021.2) mRNA, complete cds. 11/11 None
SNAP00000016414 ENSEMBL cdna:SNAP chromosome:CEL140:X:8552215:8555259:1 10/11 None
GENEFINDER00000016416 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:8552215:8555833:1 11/11 None
D2021.2a ENSEMBL cdna:known chromosome:CEL140:X:8553766:8556275:1 gene:D2021.2 11/11 None
D2021.2b ENSEMBL cdna:known chromosome:CEL140:X:8554068:8555833:1 gene:D2021.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:8553764-8555832(+) 100.0 100.0
Public Domain and Genome References
Ensembl D2021.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAP68947 Hypothetical protein D2021.2a [Caenorhabditis elegans] ref|NP_001024514.1| D2021.2a [Caenorhabditis elegans] 1.0E-179
blast AAP68947 Hypothetical protein D2021.2a [Caenorhabditis elegans] ref|NP_001024514.1| D2021.2a [Caenorhabditis elegans] 1.0E-143
blast T15889 hypothetical protein D2021.2 - Caenorhabditis elegans 1.0E-142
blast CAE74918 Hypothetical protein CBG22799 [Caenorhabditis briggsae] 1.0E-124
Protein Domains
Database ID Description E-Value
Pfam IPR001594 EMBL-EBI Zn-finger, DHHC type 2.2E-22
Pfam IPR001594 EMBL-EBI Zn-finger, DHHC type 2.2E-22
Pfam IPR002110 EMBL-EBI Ankyrin 0.62
Pfam IPR002110 EMBL-EBI Ankyrin 1.1E-7
Pfam IPR002110 EMBL-EBI Ankyrin 0.0015
Pfam IPR002110 EMBL-EBI Ankyrin 0.0068
Pfam IPR002110 EMBL-EBI Ankyrin 1.3
Pfam IPR002110 EMBL-EBI Ankyrin 2.4E-8
Pfam IPR001594 EMBL-EBI Zn-finger, DHHC type 2.2E-22
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001024514.1 6 20-42,47-69,78-100,105-127,203-225,240-262
NP_001024515.1 2 95-117,132-154
D2021.2a 6 20-42,47-69,78-100,105-127,203-225,240-262
D2021.2b 2 95-117,132-154
SNAP00000016414 6 263-285,290-312,321-343,348-370,446-468,483-505
GENEFINDER00000016416 6 263-285,290-312,321-343,348-370,446-468,483-505
Sequence
Target Sequence 
>C. ELEGANS:181161_AT
gttcttgctcttgcattcacattgttcagaatagggacactggatccgggggtcgtaaga
gctgccaagaactgtcatcagctatttgtgaatgaagctgaagcgggtatccaacatcag
caaaaatactgcttcacttgcttcattcgcaaaatggatcatacaaagcactgcgccgtt
tgcggattttgcgtgaacaattttgatcatcattgcccatggctgaacagttgtgtgact
cgccgaaacatgagggaattcatcatgtttgtcatttcggtgtcagtgtcatcagcaatt
tactgcatggctacaagtcattatgcgctgctccaaattgaagatcatggtttggaagaa
ttcctggaaactgacgcgttcttgatgatcaccatcattctctcggcgatgcacgcactc
atgcttgccgtgctgttctgtgttcaaatgaaccagatctcgcaaggagtgacgaccaac
gatcgtatcaaagctcgccgagctggtcatgcccattctcactccggctccactgactac
aatgttattc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTCTTGCTCTTGCATTCACATTGT 629 443 205 Antisense
ATCCGGGGGTCGTAAGAGCTGCCAA 498 35 248 Antisense
CTGCTTCACTTGCTTCATTCGCAAA 28 239 333 Antisense
ACTGCGCCGTTTGCGGATTTTGCGT 642 97 374 Antisense
GATCATCATTGCCCATGGCTGAACA 392 419 409 Antisense
GGCTGAACAGTTGTGTGACTCGCCG 638 539 425 Antisense
GTCATTTCGGTGTCAGTGTCATCAG 702 465 475 Antisense
GCTACAAGTCATTATGCGCTGCTCC 241 303 514 Antisense
ACTGACGCGTTCTTGATGATCACCA 652 97 574 Antisense
TTGCCGTGCTGTTCTGTGTTCAAAT 276 703 629 Antisense
GGCTCCACTGACTACAATGTTATTC 89 541 730 Antisense
Sequence Source Affymetrix Proprietary Database