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[181160_at]

Description M03F4.1 /REP_DB=WormBase Gene ID /WP=CE12356 /TR=Q23019 /GB=AAB04580.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 78      4grp_total > 18      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 83
1 2 3 4 range
A 1
(-3)
A 		34.8
(-0.6)
A 		2.8
(-2.9)
A 		84.2
(3)
A 		83
B 11.9
(-1.5)
A 		6.8
(-3)
A 		12.6
(-1.3)
A 		26.8
(3)
A 		20
C 6.4
(-0.2)
A 		3.5
(-2.1)
A 		2.2
(-3)
A 		11.3
(3)
A 		9
avr 6.4
(-2.9) 		15
(-1.4) 		5.9
(-3) 		40.8
(3) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 64
1 2 3 4 5 6 range
A 24.6
(-1)
A 		33.9
(-0.1)
A 		20.7
(-1.4)
A 		4.7
(-3)
A 		57.5
(2.3)
A 		64.7
(3)
M 		60
B 15
(-1.7)
A 		6.4
(-3)
A 		36
(1.4)
A 		6.9
(-2.9)
A 		7.1
(-2.9)
A 		47
(3)
A 		41
C 0.9
(-3)
A 		16.3
(-1.3)
A 		17.1
(-1.2)
A 		18.2
(-1.1)
A 		28.1
(0)
A 		54.8
(3)
A 		54
avr 13.5
(-2.5) 		18.9
(-1.8) 		24.6
(-1.1) 		9.9
(-3) 		30.9
(-0.2) 		55.5
(3) 		46
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 0.4
(-3)
A 		7.6
(0.6)
A 		0.7
(-2.8)
A 		12.3
(3)
A 		12
B 3.8
(0.1)
A 		1.7
(-3)
A 		2.9
(-1.2)
A 		5.7
(3)
A 		4
C 2.1
(3)
A 		1
(-2.1)
A 		0.8
(-3)
A 		1.9
(2.1)
A 		1
avr 2.1
(-2.3) 		3.4
(-0.8) 		1.5
(-3) 		6.6
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 4.5
(-1.8)
A 		12
(1)
A 		4.5
(-1.8)
A 		1.2
(-3)
A 		17.4
(3)
A 		15.7
(2.4)
M 		16
B 5.2
(-1.7)
A 		2.1
(-2.9)
A 		8.7
(-0.4)
A 		1.8
(-3)
A 		2.9
(-2.6)
A 		17.5
(3)
A 		16
C 0.3
(-3)
A 		5
(-1.4)
A 		4.4
(-1.6)
A 		3.7
(-1.9)
A 		9.1
(-0.1)
A 		18.3
(3)
A 		18
avr 3.3
(-2.6) 		6.4
(-1.3) 		5.9
(-1.5) 		2.2
(-3) 		9.8
(0) 		17.2
(3) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181160_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16667
Sequence Type Exemplar sequence
Representative Public ID M03F4.1 NCBI
Target Description M03F4.1 /REP_DB=WormBase Gene ID /WP=CE12356 /TR=Q23019 /GB=AAB04580.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000002214 ENSEMBL cdna:SNAP chromosome:CEL140:X:4976797:4977000:1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:4976797-4977001(+) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T25844 hypothetical protein M03F4.1 - Caenorhabditis elegans 4.0E-32
Sequence
Target Sequence 
>C. ELEGANS:181160_AT
tgagcgatcctcaggttgagcaggatgaccgcgatcgtgcctactcgttcatgagcagcg
actcgggagtcgatacaactccacatggacgcgttgtcagagaaaaaccgctgaaatcta
caacgacctatgagaaatacccaccatctggtttcgcctccgaatcgacaaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAGCGATCCTCAGGTTGAGCAGGA 566 569 14 Antisense
TGAGCAGGATGACCGCGATCGTGCC 279 569 30 Antisense
TGCCTACTCGTTCATGAGCAGCGAC 495 585 51 Antisense
GTTCATGAGCAGCGACTCGGGAGTC 23 443 60 Antisense
GACTCGGGAGTCGATACAACTCCAC 392 373 73 Antisense
AACTCCACATGGACGCGTTGTCAGA 291 141 90 Antisense
GACGCGTTGTCAGAGAAAAACCGCT 644 379 101 Antisense
AAACCGCTGAAATCTACAACGACCT 663 121 118 Antisense
CAACGACCTATGAGAAATACCCACC 5 187 134 Antisense
AGAAATACCCACCATCTGGTTTCGC 398 71 146 Antisense
TGGTTTCGCCTCCGAATCGACAAAA 38 551 162 Antisense
Sequence Source Affymetrix Proprietary Database