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[181159_s_at]

Description F15E6.9 /REP_DB=WormBase Gene ID /WP=CE16998 /TR=O44496 /GB=AAB92060.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 22      4grp_total > 13      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 167
1 2 3 4 range
A 87.3
(-1)
P 		44.7
(-3)
A 		44.1
(-3)
A 		173.2
(3)
P 		129
B 96.8
(0.8)
P 		47.6
(-2.8)
A 		44.9
(-3)
A 		127.7
(3)
A 		83
C 101.3
(0.8)
P 		30.8
(-2)
A 		6.6
(-3)
A 		154.2
(3)
P 		148
avr 95.1
(0.2) 		41
(-2.5) 		31.9
(-3) 		151.7
(3) 		120

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 91
1 2 3 4 5 6 range
A 126.9
(3)
A 		81.1
(-0.4)
A 		101.7
(1.1)
P 		98.7
(0.9)
P 		65.8
(-1.5)
A 		46.3
(-3)
A 		81
B 80.2
(-2.6)
P 		79.9
(-2.7)
P 		92.8
(1.8)
P 		79.5
(-2.8)
P 		96.4
(3)
A 		79
(-3)
A 		17
C 75.8
(-1)
P 		136.1
(3)
P 		79.6
(-0.7)
A 		96.2
(0.4)
P 		45.5
(-3)
A 		66.3
(-1.6)
P 		91
avr 94.3
(2.2) 		99
(3) 		91.4
(1.7) 		91.5
(1.7) 		69.2
(-2.1) 		63.9
(-3) 		35
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 31
1 2 3 4 range
A 31.8
(3)
P 		9.7
(-3)
A 		11.5
(-2.5)
A 		25.4
(1.3)
P 		22
B 30.9
(3)
P 		11.8
(-2.6)
A 		10.4
(-3)
A 		27.2
(1.9)
A 		21
C 33.5
(3)
P 		8.8
(-1.8)
A 		2.3
(-3)
A 		26
(1.6)
P 		31
avr 32.1
(3) 		10.1
(-2.5) 		8.1
(-3) 		26.2
(1.5) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 23.4
(1.1)
A 		28.8
(3)
A 		22.1
(0.7)
P 		25
(1.7)
P 		19.8
(-0.1)
A 		11.3
(-3)
A 		18
B 27.9
(-0.7)
P 		26.6
(-1.2)
P 		22.5
(-2.5)
P 		21.1
(-3)
P 		39.1
(3)
A 		29.5
(-0.2)
A 		18
C 28.1
(0)
P 		41.5
(3)
P 		20.3
(-1.7)
A 		19.4
(-1.9)
P 		14.7
(-3)
A 		22.2
(-1.3)
P 		27
avr 26.5
(-0.1) 		32.3
(3) 		21.6
(-2.7) 		21.8
(-2.6) 		24.5
(-1.1) 		21
(-3) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 181159_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10707
Sequence Type Exemplar sequence
Representative Public ID F15E6.9 NCBI
Target Description F15E6.9 /REP_DB=WormBase Gene ID /WP=CE16998 /TR=O44496 /GB=AAB92060.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068135(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068135 NCBI Caenorhabditis elegans F15E6.9 (F15E6.9) mRNA, complete cds. 11/11 None
F15E6.9 ENSEMBL cdna:known chromosome:CEL140:IV:4293613:4298996:-1 gene:F15E6.9 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000035366 6/11 Cross Hyb Matching Probes None
SNAP00000035368 5/11 Cross Hyb Matching Probes None
GENEFINDER00000035382 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4293619-4299002(-) 99.95 100.0
Public Domain and Genome References
Gene Title
Ensembl F15E6.9
Entrez Gene 177194 Entrez gene
SwissProt O44496 EMBL-EBI
WormBase CE31481 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_500536 F15E6.9 [Caenorhabditis elegans] gb|AAB92060.2| Hypothetical protein F15E6.9 [Caenorhabditis elegans] 0.0
blast CAE58489 Hypothetical protein CBG01633 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:181159_S_AT
agcgtaggcggagcattggcactgtagaagacggacaccaacccgacgaaaatatcggct
ggaacagcttgaaatgccgggtaattgggactctgggaaggattgggagctccgacgaga
agtgtgctcagctggctcagctgtcaactttgagtgttgtggaagctgacatgtgcctta
tggaatctgacggaaaaggacatctcctaatagcaacactttgctatttgacaattgtgg
agtccggcctaaacgaaatggagctgagaagtttgctcattttggagtataacctgttgc
caatagcaatacgaaggaattataaaaatttgccgtttgattattgtccggacgagtttg
gtaccacgagttgtactcaaactttgccacttcgctggtattttgttttgcaccggctcg
gacatcttttcatgaaaattgatggggatagcaatcattttgtactaccatcagcttgta
gaagggtggtttttaagaaatacctaaagcaccctcacaacttggagcacttca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGCGTAGGCGGAGCATTGGCACTGT 438 81 1409 Antisense
GTAGAAGACGGACACCAACCCGACG 572 435 1432 Antisense
ATGCCGGGTAATTGGGACTCTGGGA 520 39 1482 Antisense
GACGAGAAGTGTGCTCAGCTGGCTC 300 379 1522 Antisense
AGCTGGCTCAGCTGTCAACTTTGAG 458 79 1538 Antisense
GTGGAAGCTGACATGTGCCTTATGG 417 491 1567 Antisense
GGACATCTCCTAATAGCAACACTTT 650 525 1606 Antisense
GACAATTGTGGAGTCCGGCCTAAAC 446 363 1638 Antisense
TGTCCGGACGAGTTTGGTACCACGA 7 543 1753 Antisense
AAACTTTGCCACTTCGCTGGTATTT 138 129 1787 Antisense
CACCCTCACAACTTGGAGCACTTCA 375 199 1918 Antisense
Sequence Source Affymetrix Proprietary Database