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[181158_s_at]

Description T07H6.5 /REP_DB=WormBase Gene ID /WP=CE04915 /TR=Q22328 /GB=AAA96225.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 01      6grp_total > 03      4grp_total > 12      6grp_high1_sub > De      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 203
1 2 3 4 range
A 114.5
(-0.7)
P 		56.6
(-2.7)
A 		48.2
(-3)
A 		224.5
(3)
P 		176
B 87.2
(1.2)
P 		90.5
(1.5)
A 		38.9
(-3)
A 		108
(3)
A 		69
C 93.2
(-0.9)
P 		60.8
(-1.9)
A 		22.2
(-3)
A 		224.8
(3)
P 		203
avr 98.3
(-0.5) 		69.3
(-1.7) 		36.4
(-3) 		185.8
(3) 		149

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 107
1 2 3 4 5 6 range
A 44.7
(-3)
A 		68.9
(1.1)
P 		80.5
(3)
P 		75
(2.1)
P 		52.1
(-1.8)
M 		68.4
(1)
A 		36
B 130.9
(3)
P 		48.2
(-1.6)
P 		35.9
(-2.3)
A 		79.7
(0.1)
P 		62.5
(-0.8)
P 		23.9
(-3)
P 		107
C 85.7
(2.1)
P 		93.2
(3)
P 		41.7
(-3)
M 		76.2
(1)
P 		55.9
(-1.3)
A 		47
(-2.4)
A 		52
avr 87.1
(3) 		70.1
(0.5) 		52.7
(-2.1) 		77
(1.5) 		56.8
(-1.5) 		46.4
(-3) 		41
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 41.7
(3)
P 		12.3
(-3)
A 		12.6
(-2.9)
A 		32.9
(1.2)
P 		29
B 27.8
(3)
P 		22.4
(1.3)
A 		9
(-3)
A 		23
(1.5)
A 		19
C 30.8
(1.6)
P 		17.5
(-1.1)
A 		7.7
(-3)
A 		37.9
(3)
P 		30
avr 33.4
(3) 		17.4
(-1.1) 		9.8
(-3) 		31.3
(2.5) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 8.2
(-3)
A 		24.5
(3)
P 		17.5
(0.4)
P 		19
(1)
P 		15.7
(-0.2)
M 		16.7
(0.1)
A 		16
B 45.6
(3)
P 		16
(-1.8)
P 		8.7
(-3)
A 		21.1
(-1)
P 		25.4
(-0.3)
P 		8.9
(-3)
P 		37
C 31.7
(3)
P 		28.4
(2.1)
P 		10.6
(-3)
M 		15.3
(-1.7)
P 		18.1
(-0.9)
A 		15.7
(-1.5)
A 		21
avr 28.5
(3) 		23
(1) 		12.3
(-3) 		18.5
(-0.7) 		19.7
(-0.3) 		13.8
(-2.4) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 181158_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16647
Sequence Type Exemplar sequence
Representative Public ID T07H6.5 NCBI
Target Description T07H6.5 /REP_DB=WormBase Gene ID /WP=CE04915 /TR=Q22328 /GB=AAA96225.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076652(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076652 NCBI Caenorhabditis elegans T07H6.5 (T07H6.5) mRNA, complete cds. 11/11 None
GENEFINDER00000003225 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:6286496:6291232:-1 11/11 None
T07H6.5 ENSEMBL cdna:known chromosome:CEL140:X:6286422:6291474:-1 gene:T07H6.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000003216 1/11 Cross Hyb Matching Probes None
SNAP00000003217 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:6286495-6291342(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T07H6.5
Entrez Gene 180903 Entrez gene
SwissProt Q22328 EMBL-EBI
WormBase CE31364 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1624417_A_AT dm
DROSGENOME1:142282_AT dm
Protein Similarities
Method ID Description E-Value
blast AAA96225 Hypothetical protein T07H6.5 [Caenorhabditis elegans] ref|NP_509053.2| T07H6.5 [Caenorhabditis elegans] 0.0
blast CAE61232 Hypothetical protein CBG05031 [Caenorhabditis briggsae] 0.0
blast XP_393947 PREDICTED: similar to ENSANGP00000002431 [Apis mellifera] 1.0E-101
blast XP_393947 PREDICTED: similar to ENSANGP00000002431 [Apis mellifera] 2.0E-95
Protein Domains
Database ID Description E-Value
Pfam IPR000436 EMBL-EBI Sushi domain/SCR domain/CCP module 2.9E-15
Pfam IPR000436 EMBL-EBI Sushi domain/SCR domain/CCP module 3.1E-5
Pfam IPR000436 EMBL-EBI Sushi domain/SCR domain/CCP module 7.2E-14
Pfam IPR000436 EMBL-EBI Sushi domain/SCR domain/CCP module 3.0E-12
Pfam IPR000436 EMBL-EBI Sushi domain/SCR domain/CCP module 4.9E-11
Pfam IPR000436 EMBL-EBI Sushi domain/SCR domain/CCP module 5.4E-6
Pfam IPR000436 EMBL-EBI Sushi domain/SCR domain/CCP module 2.9E-4
Pfam IPR000436 EMBL-EBI Sushi domain/SCR domain/CCP module 2.9E-15
Pfam IPR000436 EMBL-EBI Sushi domain/SCR domain/CCP module 3.1E-5
Pfam IPR000436 EMBL-EBI Sushi domain/SCR domain/CCP module 7.2E-14
Pfam IPR000436 EMBL-EBI Sushi domain/SCR domain/CCP module 3.0E-12
Pfam IPR000436 EMBL-EBI Sushi domain/SCR domain/CCP module 4.9E-11
Pfam IPR000436 EMBL-EBI Sushi domain/SCR domain/CCP module 5.4E-6
Pfam IPR000436 EMBL-EBI Sushi domain/SCR domain/CCP module 2.9E-4
Sequence
Target Sequence 
>C. ELEGANS:181158_S_AT
ggtcacatgttccagtttgtagtcctttaagctgccacaattggccgccaagggttccac
atgctcgaattctattctcgaaatcatcgcacggctcaatcgccaaatatgaatgcaaca
atggttatcatccaaacagaaataatcaaattataaaatgtctttatggagaatggacta
aagacggaccaccaatgaaatgtttaccaagttggtgtgaacaccctagcaaaacatatg
gaacacttcctggcggacaaatacttctggagggaatccttggtgcatacgagtttcaaa
gttatattcaaaaagtagaagaagggagagctatcagttttcagtgtgggaagggcaatt
atttgattgggccccctaaggcaacttgtgtgaatggtgaatggatgccaaaagtgtcac
ccaaatgtgtttcgcaaacgcatccaatgattgaaggaaaaattctttgggaccgaaaaa
aacgaagtttgcctggcagagccgtaagagaatatgtcgatgatgaactatcaactcatc
ggcaacactcgggaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTCACATGTTCCAGTTTGTAGTCC 28 505 1067 Antisense
GCCACAATTGGCCGCCAAGGGTTCC 126 193 1100 Antisense
GGTTCCACATGCTCGAATTCTATTC 576 507 1119 Antisense
CGAAATCATCGCACGGCTCAATCGC 105 253 1145 Antisense
GGAACACTTCCTGGCGGACAAATAC 280 529 1306 Antisense
GGGAATCCTTGGTGCATACGAGTTT 202 403 1338 Antisense
GGGAGAGCTATCAGTTTTCAGTGTG 423 495 1390 Antisense
TTGATTGGGCCCCCTAAGGCAACTT 43 673 1429 Antisense
AAGTGTCACCCAAATGTGTTTCGCA 274 159 1478 Antisense
GTGTTTCGCAAACGCATCCAATGAT 695 485 1493 Antisense
TCAACTCATCGGCAACACTCGGGAA 698 629 1597 Antisense
Sequence Source Affymetrix Proprietary Database