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[181157_at]

Description B0547.1 /REP_DB=WormBase Gene ID /WP=CE06722 /TR=P91001 /GB=AAB37991.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 68      6grp_high1_10_10 > 95      4grp_highest_8_8 > 13      4grp_high_8_8 > 23      6grp_highest_nonorm > 97      6grp_total > 86      4grp_total > 16      6grp_highest_sub > In      6grp_cgc > 58      6grp_high1_sub > In      6grp_cgc_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 424
1 2 3 4 range
A 792.7
(-3)
P 		1023.5
(0.8)
P 		1094.3
(1.9)
P 		1161.1
(3)
P 		368
B 1000
(-1.5)
P 		1038.8
(-0.7)
P 		931.6
(-3)
P 		1210.9
(3)
P 		279
C 787.2
(-3)
P 		851.5
(-1.6)
P 		968.2
(1.1)
P 		1054.7
(3)
P 		268
avr 860
(-3) 		971.3
(-0.6) 		998
(-0.1) 		1142.2
(3) 		282

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 892
1 2 3 4 5 6 range
A 716.7
(-3)
P 		794
(-2.2)
P 		739.7
(-2.8)
P 		1035.4
(0.2)
P 		1026.5
(0.1)
P 		1316.1
(3)
P 		599
B 600.2
(-3)
P 		849.2
(-1.3)
P 		903.7
(-0.9)
P 		947.5
(-0.6)
P 		1054.5
(0.2)
P 		1460.9
(3)
P 		861
C 568.6
(-3)
P 		790.7
(-1.5)
P 		858.9
(-1)
P 		1039
(0.3)
P 		902.5
(-0.7)
P 		1436.2
(3)
P 		868
avr 628.5
(-3) 		811.3
(-1.6) 		834.1
(-1.4) 		1007.3
(-0.1) 		994.5
(-0.2) 		1404.4
(3) 		776
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 168
1 2 3 4 range
A 288.6
(3)
P 		222.2
(-0.4)
P 		286.1
(2.9)
P 		170
(-3)
P 		119
B 318.9
(3)
P 		256.6
(-0.6)
P 		215.9
(-3)
P 		258
(-0.5)
P 		103
C 260.6
(0.1)
P 		244.8
(-0.5)
P 		337.5
(3)
P 		177.8
(-3)
P 		160
avr 289.4
(3) 		241.2
(-0.3) 		279.8
(2.3) 		201.9
(-3) 		88

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 413
1 2 3 4 5 6 range
A 132.1
(-3)
P 		282.4
(1.8)
P 		161.1
(-2.1)
P 		262.6
(1.2)
P 		309.8
(2.7)
P 		320.4
(3)
P 		188
B 208.8
(-3)
P 		282.7
(-1.7)
P 		219.4
(-2.8)
P 		250.9
(-2.2)
P 		428.4
(0.9)
P 		544.8
(3)
P 		336
C 210.8
(-3)
P 		241.3
(-2.3)
P 		218.6
(-2.8)
P 		208.9
(-3)
P 		292
(-1.2)
P 		480.8
(3)
P 		272
avr 183.9
(-3) 		268.8
(-1.1) 		199.7
(-2.6) 		240.8
(-1.7) 		343.4
(0.6) 		448.7
(3) 		265
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181157_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10556
Sequence Type Exemplar sequence
Representative Public ID B0547.1 NCBI
Target Description B0547.1 /REP_DB=WormBase Gene ID /WP=CE06722 /TR=P91001 /GB=AAB37991.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068440(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068440 NCBI Caenorhabditis elegans COP-9 SigNalosome subunit family member (csn-5) (csn-5) mRNA, complete cds. 11/11 None
SNAP00000013090 ENSEMBL cdna:SNAP chromosome:CEL140:IV:5649521:5650971:1 11/11 None
GENEFINDER00000013092 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:5649521:5650971:1 11/11 None
B0547.1 ENSEMBL cdna:known chromosome:CEL140:IV:5649516:5651041:1 gene:B0547.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:5649526-5650977(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol csn-5
Ensembl B0547.1
Entrez Gene 177342 Entrez gene
SwissProt P91001 EMBL-EBI
WormBase CE06722 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:264724_AT COP9 signalosome subunit 5B / CSN subunit 5B (CSN5B) / c-JUN coactivator protein AJH1, putative (AJH1) at
ATGENOME1:16123_S_AT COP9 signalosome subunit 5B / CSN subunit 5B (CSN5B) / c-JUN coactivator protein AJH1, putative (AJH1) at
ATGENOME1:14133_S_AT COP9 signalosome subunit 5B / CSN subunit 5B (CSN5B) / c-JUN coactivator protein AJH1, putative (AJH1) at
CANINE:1588888_AT similar to COP9 signalosome complex subunit 5 (Signalosome subunit 5) (SGN5) (Jun activation domain-binding protein 1) (Kip1 C-terminus interacting protein 2) cfa
CANINE:1585452_S_AT similar to COP9 signalosome complex subunit 5 (Signalosome subunit 5) (SGN5) (Jun activation domain-binding protein 1) (Kip1 C-terminus interacting protein 2) cfa
CANINE:1585451_AT similar to COP9 signalosome complex subunit 5 (Signalosome subunit 5) (SGN5) (Jun activation domain-binding protein 1) (Kip1 C-terminus interacting protein 2) cfa
CANINE_2:CFA.11305.1.A1_S_AT similar to COP9 signalosome complex subunit 5 (Signalosome subunit 5) (SGN5) (Jun activation domain-binding protein 1) (Kip1 C-terminus interacting protein 2) cfa
CANINE_2:CFA.15322.1.S1_S_AT similar to COP9 signalosome complex subunit 5 (Signalosome subunit 5) (SGN5) (Jun activation domain-binding protein 1) (Kip1 C-terminus interacting protein 2) cfa
DROSOPHILA_2:1632776_AT COP9 complex homolog subunit 5 dm
DROSGENOME1:153810_AT COP9 complex homolog subunit 5 dm
HG-FOCUS:201652_AT COP9 constitutive photomorphogenic homolog subunit 5 (Arabidopsis) hs
HG-U133A:201652_AT COP9 constitutive photomorphogenic homolog subunit 5 (Arabidopsis) hs
HG-U133_PLUS_2:201652_AT COP9 constitutive photomorphogenic homolog subunit 5 (Arabidopsis) hs
HG-U133A_2:201652_AT COP9 constitutive photomorphogenic homolog subunit 5 (Arabidopsis) hs
HG-U95AV2:1789_AT COP9 constitutive photomorphogenic homolog subunit 5 (Arabidopsis) hs
HC-G110:1789_AT COP9 constitutive photomorphogenic homolog subunit 5 (Arabidopsis) hs
HUGENEFL:U65928_AT COP9 constitutive photomorphogenic homolog subunit 5 (Arabidopsis) hs
U133_X3P:G5803045_3P_AT COP9 constitutive photomorphogenic homolog subunit 5 (Arabidopsis) hs
MU11KSUBA:U70736_S_AT COP9 (constitutive photomorphogenic) homolog, subunit 5 (Arabidopsis thaliana) mm
MG-U74AV2:95460_AT COP9 (constitutive photomorphogenic) homolog, subunit 5 (Arabidopsis thaliana) mm
MOE430A:1439243_X_AT COP9 (constitutive photomorphogenic) homolog, subunit 5 (Arabidopsis thaliana) mm
MOUSE430A_2:1439243_X_AT COP9 (constitutive photomorphogenic) homolog, subunit 5 (Arabidopsis thaliana) mm
MOUSE430_2:1439243_X_AT COP9 (constitutive photomorphogenic) homolog, subunit 5 (Arabidopsis thaliana) mm
MOE430A:1460171_AT COP9 (constitutive photomorphogenic) homolog, subunit 5 (Arabidopsis thaliana) mm
MOUSE430A_2:1460171_AT COP9 (constitutive photomorphogenic) homolog, subunit 5 (Arabidopsis thaliana) mm
MOUSE430_2:1460171_AT COP9 (constitutive photomorphogenic) homolog, subunit 5 (Arabidopsis thaliana) mm
MU19KSUBA:TC15012_AT Kip1 C-terminus interacting protein-2 (Kic2) mm
RG-U34C:RC_AI105072_AT COP9 (constitutive photomorphogenic) homolog, subunit 5 (Arabidopsis thaliana) (predicted) rn
RAE230A:1372209_AT COP9 (constitutive photomorphogenic) homolog, subunit 5 (Arabidopsis thaliana) (predicted) rn
RAT230_2:1372209_AT COP9 (constitutive photomorphogenic) homolog, subunit 5 (Arabidopsis thaliana) (predicted) rn
Protein Similarities
Method ID Description E-Value
blast AAB37991 Cop-9 signalosome subunit protein 5 [Caenorhabditis elegans] ref|NP_500841.1| COP-9 SigNalosome subunit family member (csn-5) [Caenorhabditis elegans] sp|P91001|CSN5_CAEEL COP9 signalosome complex subunit 5 (Signalosome subunit 5) (JAB1 homolog) 0.0
blast CAE72673 Hypothetical protein CBG19889 [Caenorhabditis briggsae] 0.0
blast AAC26484 putative JUN kinase activation domain binding protein [Medicago sativa] 1.0E-108
Protein Domains
Database ID Description E-Value
Pfam IPR000555 EMBL-EBI Peptidase M67, Mov34 1.4E-50
Sequence
Target Sequence 
>C. ELEGANS:181157_AT
gacattggcgcattccgtacatatccagaaggataccgtccaccagatgatgttccatca
gagtatcagtcgattcctctcgcaaagattgaggatttcggtgtacattgcaaacgatac
tactcgcttgacgtcagcttcttcaaatcacaacttgacgctcacatcttgacttctctg
tggaacagctattggatttccactctcagcagttctccactcttctcaaacgtcgaattc
ctcaacaatcaaattcaagacatcaatcagaagctgtcggccgtcgataagaagctccaa
ttgaatgacagaagtgtcgatggacatgaagctttgatgaaagtcgtgaccgatgcaaag
gcagtcggagatgaacttgaaactggaagaatctctcatctcgtgaaacaactattgttt
gctcgccaagctggtggtggctgtggatgttcccatgcttctgcaggatctccaatggat
atcgccgtggcaactgaaccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACATTGGCGCATTCCGTACATATC 370 371 559 Antisense
GAAGGATACCGTCCACCAGATGATG 97 335 586 Antisense
CAGAGTATCAGTCGATTCCTCTCGC 387 205 617 Antisense
ATACTACTCGCTTGACGTCAGCTTC 159 25 675 Antisense
ACAACTTGACGCTCACATCTTGACT 55 113 708 Antisense
TATTGGATTTCCACTCTCAGCAGTT 529 665 748 Antisense
GTCGGCCGTCGATAAGAAGCTCCAA 426 469 834 Antisense
ACAACTATTGTTTGCTCGCCAAGCT 1 113 966 Antisense
CTGGTGGTGGCTGTGGATGTTCCCA 190 241 989 Antisense
CATGCTTCTGCAGGATCTCCAATGG 679 209 1012 Antisense
GGATATCGCCGTGGCAACTGAACCC 195 509 1035 Antisense
Sequence Source Affymetrix Proprietary Database