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[181156_at]

Description T08A9.8 /REP_DB=WormBase Gene ID /WP=CE04923 /TR=Q22338 /GB=AAA81416.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 24      6grp_high1_10_10 > 31      6grp_highest_nonorm > 33      6grp_total > 42      4grp_total > 58      6grp_cgc > 81      6grp_high1_sub > 03      6grp_cgc_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2112
1 2 3 4 range
A 683.9
(-1.3)
P
2193.7
(3)
P
2050.1
(2.6)
P
109.1
(-3)
A
2085
B 715
(-1.1)
P
1964.6
(2.6)
P
2103.6
(3)
P
82
(-3)
A
2022
C 701.7
(-1.2)
P
2082.1
(3)
P
2024.8
(2.8)
P
96.1
(-3)
A
1986
avr 700.2
(-1.2)
2080.1
(3)
2059.5
(2.9)
95.7
(-3)
1984

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3207
1 2 3 4 5 6 range
A 1826.7
(-0.7)
P
2066.8
(-0.3)
P
3740.4
(3)
P
1566.6
(-1.2)
P
866.1
(-2.6)
P
658.1
(-3)
P
3082
B 1531.9
(-0.2)
P
2252.5
(1.8)
P
2697.2
(3)
P
1534
(-0.2)
P
919.1
(-1.9)
P
533.9
(-3)
P
2163
C 1726.4
(-0.2)
P
2231.2
(1)
P
3013.1
(3)
P
1333.5
(-1.2)
P
985.4
(-2.1)
P
607.8
(-3)
P
2405
avr 1695
(-0.4)
2183.5
(0.7)
3150.2
(3)
1478
(-0.9)
923.5
(-2.2)
599.9
(-3)
2550
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 690
1 2 3 4 range
A 249
(-0.3)
P
476.2
(2.3)
P
535.9
(3)
P
16
(-3)
A
520
B 228
(-0.3)
P
485.2
(3)
P
487.4
(3)
P
17.5
(-3)
A
470
C 232.3
(-1.1)
P
598.6
(2.1)
P
705.7
(3)
P
16.2
(-3)
A
690
avr 236.4
(-0.6)
520
(2.4)
576.3
(3)
16.6
(-3)
560

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 654
1 2 3 4 5 6 range
A 336.7
(-1.4)
P
735
(2.3)
P
814.6
(3)
P
397.3
(-0.8)
P
261.4
(-2.1)
P
160.2
(-3)
P
654
B 533
(0.6)
P
749.8
(3)
P
655
(2)
P
406.3
(-0.7)
P
373.4
(-1.1)
P
199.1
(-3)
P
551
C 639.9
(1.6)
P
680.8
(2.1)
P
766.9
(3)
P
268.2
(-2.3)
P
318.9
(-1.8)
P
203.5
(-3)
P
563
avr 503.2
(0.4)
721.9
(2.7)
745.5
(3)
357.3
(-1.2)
317.9
(-1.6)
187.6
(-3)
558
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181156_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16638
Sequence Type Exemplar sequence
Representative Public ID T08A9.8 NCBI
Target Description T08A9.8 /REP_DB=WormBase Gene ID /WP=CE04923 /TR=Q22338 /GB=AAA81416.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076836(11)
Transcript Assignments
Representative
Transcript
Description Matching Probes Related Probesets by Grade
NM_076836 NCBI Caenorhabditis elegans SaPosin-like Protein family member (spp-4) (spp-4) mRNA, complete cds. 11/11 None
SNAP00000001754 ENSEMBL cdna:SNAP chromosome:CEL140:X:7318289:7318700:-1 11/11 None
GENEFINDER00000001768 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:7318289:7318700:-1 11/11 None
T08A9.8 ENSEMBL cdna:known chromosome:CEL140:X:7318289:7318700:-1 gene:T08A9.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:7318287-7318699(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol spp-4
Ensembl T08A9.8
Entrez Gene 188266 Entrez gene
SwissProt Q22338 EMBL-EBI
WormBase CE04923 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_509237 SaPosin-like Protein family member (spp-4) [Caenorhabditis elegans] gb|AAA81416.1| Saposin-like protein family protein 4 [Caenorhabditis elegans] 5.0E-46
blast NP_741832 SaPosin-like Protein family member (spp-2) [Caenorhabditis elegans] gb|AAM69085.1| Saposin-like protein family protein 2 [Caenorhabditis elegans] 1.0E-38
blast B89567 protein T08A9.7 [imported] - Caenorhabditis elegans 1.0E-38
Protein Domains
Database ID Description E-Value
Pfam IPR008138 EMBL-EBI Saposin-like type B, 2 4.0E-11
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509237.1 1 4-21
T08A9.8 1 4-21
SNAP00000001754 1 4-21
GENEFINDER00000001768 1 4-21
Sequence
Target Sequence
>C. ELEGANS:181156_AT
tgtgctagccgttttggttttcgtagccaccgccgtcgtgcttccacaccaaagaaattc
cctgggatgtcaaatgtgcgagcttgccgtcaagaagtacgacggctccgttgacaagga
tgtaaatggtatcaagaaggactttgacaccgagtgcaagaaactgttccactctattcc
atttgccccacaagaatgtgaacactatgtaaacaccaagcttgaccccattatcaagga
gctcgaaagcggaactgctccaaa


BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position
Strandedness
TGTGCTAGCCGTTTTGGTTTTCGTA 81 555 27 Antisense
GTCGTGCTTCCACACCAAAGAAATT 525 471 61 Antisense
AATTCCCTGGGATGTCAAATGTGCG 399 177 82 Antisense
CAAATGTGCGAGCTTGCCGTCAAGA 613 191 97 Antisense
ACGACGGCTCCGTTGACAAGGATGT 274 93 125 Antisense
AGAAGGACTTTGACACCGAGTGCAA 374 73 161 Antisense
AAGAAACTGTTCCACTCTATTCCAT 317 153 184 Antisense
TCTATTCCATTTGCCCCACAAGAAT 251 615 199 Antisense
TATGTAAACACCAAGCTTGACCCCA 467 655 232 Antisense
GCTTGACCCCATTATCAAGGAGCTC 286 307 246 Antisense
AGCTCGAAAGCGGAACTGCTCCAAA 255 81 266 Antisense
Sequence Source Affymetrix Proprietary Database