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[181155_at]

Description C55C3.2 /REP_DB=WormBase Gene ID /WP=CE06989 /TR=Q18868 /GB=AAA96172.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 11      4grp_total > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 153
1 2 3 4 range
A 41.6
(-1.5)
A 		5.5
(-3)
A 		33.5
(-1.9)
A 		154
(3)
P 		149
B 44.6
(0.2)
A 		33.8
(-0.9)
A 		12.6
(-3)
A 		73.5
(3)
P 		61
C 49.3
(-1.4)
P 		9
(-3)
A 		13.1
(-2.8)
A 		158
(3)
P 		149
avr 45.2
(-1.4) 		16.1
(-3) 		19.7
(-2.8) 		128.5
(3) 		112

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 94
1 2 3 4 5 6 range
A 16.1
(-2.6)
A 		48.3
(-0.3)
A 		95.4
(3)
P 		10.1
(-3)
A 		49.1
(-0.3)
A 		44.4
(-0.6)
A 		85
B 21.4
(-3)
A 		64.7
(3)
P 		30.2
(-1.8)
A 		47
(0.5)
A 		50.2
(1)
P 		38.4
(-0.6)
A 		43
C 37.2
(1.6)
A 		48.3
(3)
A 		14.7
(-1.3)
A 		6
(-2.5)
A 		1.8
(-3)
A 		2.8
(-2.9)
A 		47
avr 24.9
(-2.3) 		53.8
(3) 		46.8
(1.7) 		21
(-3) 		33.7
(-0.7) 		28.5
(-1.6) 		33
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 15.2
(0.9)
A 		1.2
(-3)
A 		8.8
(-0.9)
A 		22.5
(3)
P 		21
B 14.2
(2.3)
A 		8.3
(-0.5)
A 		2.9
(-3)
A 		15.7
(3)
P 		13
C 16.3
(0.4)
P 		2.6
(-3)
A 		4.6
(-2.5)
A 		26.6
(3)
P 		24
avr 15.2
(0.8) 		4
(-3) 		5.4
(-2.5) 		21.6
(3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 3
(-2.9)
A 		17.2
(1.8)
A 		20.8
(3)
P 		2.6
(-3)
A 		14.8
(1)
A 		10.8
(-0.3)
A 		18
B 7.5
(-2.9)
A 		21.5
(3)
P 		7.3
(-3)
A 		12.4
(-0.8)
A 		20.4
(2.5)
P 		14.3
(-0)
A 		14
C 13.8
(2.6)
A 		14.7
(3)
A 		3.7
(-1.7)
A 		1.2
(-2.7)
A 		0.6
(-3)
A 		0.9
(-2.9)
A 		14
avr 8.1
(-1.7) 		17.8
(3) 		10.6
(-0.5) 		5.4
(-3) 		11.9
(0.1) 		8.7
(-1.4) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181155_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10669
Sequence Type Exemplar sequence
Representative Public ID C55C3.2 NCBI
Target Description C55C3.2 /REP_DB=WormBase Gene ID /WP=CE06989 /TR=Q18868 /GB=AAA96172.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068448
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
C55C3.2 ENSEMBL cdna:known chromosome:CEL140:IV:5707081:5708402:1 gene:C55C3.2 None
NM_068448 NCBI Caenorhabditis elegans C55C3.2 (C55C3.2) mRNA, complete cds. None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:5707086-5708408(+) 62.21 100.0
Public Domain and Genome References
Gene Title
Ensembl C55C3.2
Entrez Gene 183852 Entrez gene
SwissProt Q18868 EMBL-EBI
WormBase CE36587 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_500849 C55C3.2 [Caenorhabditis elegans] gb|AAA96172.2| Hypothetical protein C55C3.2 [Caenorhabditis elegans] 2.0E-82
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500849.2 1 74-96
C55C3.2 1 74-96
Sequence
Target Sequence 
>C. ELEGANS:181155_AT
ctattgaattcttaccacacatctggtttctgaatgaactccttgtggtgtgtctgctta
atcatcaaaataattcaattttgtgtcattttactaaatctttggggacaaaatcaatag
ttttggtcaaatttgtactgtcaaattgttgctgtgtgcggcgaattttgaaatttgcca
agctcggtaaacggcaaattcggcaaattcgtcaaatttgccgcacaataatttttaaat
tatttttggatgtgattatgaaattgtgggttctacttcggttgaattttggaattgcaa
agatagtctatttcaacatgtccacatattcaaatagtttattttttttcacactatcgg
tttccatctccgttttcagaccagcaataatttttttggtaacatgtctggattttttag
ttttattgggtttagtatacaagaaaacatgtaaacctcgaggatatatgtctctcgaaa
caacaggtttttttgtgattgataaaaatttttacaaaataagcttcaatcaaaaagcta
taaatatcccaagaacatgttcatcattgcgtttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTATTGAATTCTTACCACACATCTG 530 223 305 Antisense
ATCTGGTTTCTGAATGAACTCCTTG 508 33 325 Antisense
ATGAACTCCTTGTGGTGTGTCTGCT 555 43 338 Antisense
GTGGTGTGTCTGCTTAATCATCAAA 70 489 349 Antisense
GTCAAATTGTTGCTGTGTGCGGCGA 539 481 444 Antisense
GAAATTTGCCAAGCTCGGTAAACGG 343 359 474 Antisense
GAAATTGTGGGTTCTACTTCGGTTG 430 363 564 Antisense
GATAGTCTATTTCAACATGTCCACA 452 425 606 Antisense
TTTTCACACTATCGGTTTCCATCTC 168 677 650 Antisense
CATCTCCGTTTTCAGACCAGCAATA 137 211 669 Antisense
AAGAACATGTTCATCATTGCGTTTC 181 153 855 Antisense
Sequence Source Affymetrix Proprietary Database