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[181154_at]

Description ZC404.7 /REP_DB=WormBase Gene ID /WP=CE07597 /TR=Q23286 /GB=AAA97962.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 94      4grp_total > 26      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 39
1 2 3 4 range
A 2.2
(-3)
A 		40.7
(3)
A 		2.9
(-2.9)
A 		26.9
(0.8)
A 		39
B 1.4
(-3)
A 		3
(-2)
A 		1.4
(-3)
A 		11.1
(3)
A 		10
C 2.7
(-2.8)
A 		4
(-2.5)
A 		1.4
(-3)
A 		33.7
(3)
A 		32
avr 2.1
(-2.9) 		15.9
(0.8) 		1.9
(-3) 		23.9
(3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 2.7
(0.6)
A 		1.1
(-3)
A 		1.4
(-2.3)
A 		3.4
(2.1)
A 		3.8
(3)
A 		1.6
(-1.9)
A 		3
B 2
(-3)
A 		2.6
(-2.8)
A 		2.2
(-2.9)
A 		3.8
(-2.5)
A 		26.4
(3)
A 		1.8
(-3)
A 		25
C 4.1
(-2.3)
A 		2
(-3)
A 		5.1
(-1.9)
A 		18.8
(3)
A 		4.2
(-2.2)
A 		16
(2)
A 		17
avr 2.9
(-2.4) 		1.9
(-3) 		2.9
(-2.4) 		8.7
(1.3) 		11.5
(3) 		6.5
(-0.1) 		10
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 0.8
(-3)
A 		8.8
(3)
A 		0.8
(-3)
A 		3.9
(-0.7)
A 		8
B 0.5
(-2.4)
A 		0.7
(-1.9)
A 		0.3
(-3)
A 		2.4
(3)
A 		2
C 0.9
(-2.5)
A 		1.2
(-2.2)
A 		0.5
(-3)
A 		5.7
(3)
A 		5
avr 0.7
(-2.7) 		3.6
(2.3) 		0.5
(-3) 		4
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 0.5
(-1.7)
A 		0.4
(-2.3)
A 		0.3
(-3)
A 		0.9
(1)
A 		1.2
(3)
A 		0.4
(-2.3)
A 		1
B 0.7
(-2.9)
A 		0.9
(-2.8)
A 		0.5
(-3)
A 		1
(-2.7)
A 		10.7
(3)
A 		0.7
(-2.9)
A 		10
C 1.5
(-1.9)
A 		0.6
(-3)
A 		1.3
(-2.1)
A 		3.8
(1.1)
A 		1.4
(-2)
A 		5.3
(3)
A 		5
avr 0.9
(-2.5) 		0.6
(-3) 		0.7
(-2.8) 		1.9
(-0.9) 		4.4
(3) 		2.1
(-0.6) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181154_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12430
Sequence Type Exemplar sequence
Representative Public ID ZC404.7 NCBI
Target Description ZC404.7 /REP_DB=WormBase Gene ID /WP=CE07597 /TR=Q23286 /GB=AAA97962.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072315(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072315 NCBI Caenorhabditis elegans ZC404.7 (ZC404.7) mRNA, complete cds. 11/11 None
ZC404.7 ENSEMBL cdna:known chromosome:CEL140:V:6781145:6782294:-1 gene:ZC404.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000042525 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:6781145-6782295(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZC404.7
Entrez Gene 191156 Entrez gene
SwissProt Q23286 EMBL-EBI
WormBase CE07597 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA97962 Hypothetical protein ZC404.7 [Caenorhabditis elegans] ref|NP_504716.1| ZC404.7 [Caenorhabditis elegans] 8.0E-58
Sequence
Target Sequence 
>C. ELEGANS:181154_AT
aagcggtttgtcgaaagaaagctgtgggaggaagattcagagtttttgacctacttttcc
cgaaggttgaaagttcaatatttgagcgaggactgcaggcaggtcagccagcaattactg
ccgccgccctgagcgctgatttgtttcaaagtattgttttggagaaaaatctattaggga
aacacgccaagaaaaaaattcagggaaatcccacgatgtttgaacaaattcatttcttga
agacagctgaaaagaagaagtatcaaatgagttatgcttac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGCGGTTTGTCGAAAGAAAGCTGT 12 151 35 Antisense
GTGGGAGGAAGATTCAGAGTTTTTG 246 489 58 Antisense
ATTTGAGCGAGGACTGCAGGCAGGT 433 17 114 Antisense
GACTGCAGGCAGGTCAGCCAGCAAT 29 375 125 Antisense
CAGGTCAGCCAGCAATTACTGCCGC 460 207 134 Antisense
GCCCTGAGCGCTGATTTGTTTCAAA 86 287 160 Antisense
AAATCTATTAGGGAAACACGCCAAG 403 105 201 Antisense
TCAGGGAAATCCCACGATGTTTGAA 66 623 234 Antisense
GAAATCCCACGATGTTTGAACAAAT 492 359 239 Antisense
AATTCATTTCTTGAAGACAGCTGAA 412 175 261 Antisense
GAAGTATCAAATGAGTTATGCTTAC 58 337 291 Antisense
Sequence Source Affymetrix Proprietary Database