[Home] | [Total List]

[181153_s_at]

Description W03G11.4 /REP_DB=WormBase Gene ID /WP=CE18331 /TR=Q18002 /GB=CAA91547.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 41      6grp_high1_10_10 > 04      4grp_high_8_8 > 27      6grp_highest_nonorm > 70      6grp_total > 15      4grp_total > 29      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 175
1 2 3 4 range
A 286.1
(3)
P 		242.6
(1.5)
P 		111.3
(-3)
A 		259.4
(2.1)
P 		175
B 282.2
(3)
P 		214.4
(-0.4)
P 		160.8
(-3)
A 		251.1
(1.5)
P 		121
C 250
(3)
P 		230
(1.8)
P 		153.6
(-3)
P 		238.4
(2.3)
P 		96
avr 272.8
(3) 		229
(1) 		141.9
(-3) 		249.6
(1.9) 		131

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 442
1 2 3 4 5 6 range
A 409.6
(1.7)
P 		465.5
(3)
P 		213.9
(-2.8)
P 		216.2
(-2.7)
P 		204.9
(-3)
P 		211.1
(-2.9)
P 		261
B 395.2
(3)
P 		383.4
(2.7)
P 		358.5
(2.1)
P 		268.6
(-0.1)
P 		194.7
(-1.9)
P 		148.1
(-3)
P 		247
C 589.7
(3)
P 		451.4
(1)
P 		307.7
(-1.1)
P 		226.4
(-2.3)
P 		213.9
(-2.5)
P 		176.8
(-3)
P 		413
avr 464.8
(3) 		433.4
(2.3) 		293.4
(-0.6) 		237.1
(-1.8) 		204.5
(-2.5) 		178.7
(-3) 		286
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 75
1 2 3 4 range
A 104.2
(3)
P 		52.7
(-1.1)
P 		29.1
(-3)
A 		38
(-2.3)
P 		75
B 90
(3)
P 		53
(-1.2)
P 		37.3
(-3)
A 		53.5
(-1.2)
P 		53
C 82.8
(3)
P 		66.1
(0.6)
P 		53.5
(-1.1)
P 		40.2
(-3)
P 		43
avr 92.3
(3) 		57.3
(-1) 		40
(-3) 		43.9
(-2.6) 		52

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 173
1 2 3 4 5 6 range
A 75.5
(-1.5)
P 		165.6
(3)
P 		46.6
(-3)
P 		54.8
(-2.6)
P 		61.8
(-2.2)
P 		51.4
(-2.8)
P 		119
B 137.5
(3)
P 		127.6
(2.3)
P 		87.1
(-0.7)
P 		71.2
(-1.8)
P 		79.1
(-1.3)
P 		55.2
(-3)
P 		82
C 218.6
(3)
P 		137.7
(0.2)
P 		78.3
(-1.9)
P 		45.5
(-3)
P 		69.2
(-2.2)
P 		59.2
(-2.5)
P 		173
avr 143.9
(3) 		143.6
(3) 		70.7
(-2) 		57.2
(-2.9) 		70
(-2) 		55.3
(-3) 		89
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 181153_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16945
Sequence Type Exemplar sequence
Representative Public ID W03G11.4 NCBI
Target Description W03G11.4 /REP_DB=WormBase Gene ID /WP=CE18331 /TR=Q18002 /GB=CAA91547.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077618(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077618 NCBI Caenorhabditis elegans W03G11.4 (W03G11.4) mRNA, complete cds. 11/11 None
W03G11.4.1 ENSEMBL cdna:known chromosome:CEL140:X:12076413:12080193:-1 gene:W03G11.4 11/11 A 
W03G11.4.2 ENSEMBL cdna:known chromosome:CEL140:X:12076474:12093004:-1 gene:W03G11.4 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000031751 6/11 Cross Hyb Matching Probes None
GENEFINDER00000031757 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:12076727-12079462(-) 98.42 98.42
Public Domain and Genome References
Gene Title
Ensembl W03G11.4
Entrez Gene 181377 Entrez gene
SwissProt Q18002 EMBL-EBI
WormBase CE18331 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA91547 Hypothetical protein W03G11.4 [Caenorhabditis elegans] emb|CAA91533.1| Hypothetical protein W03G11.4 [Caenorhabditis elegans] ref|NP_510019.1| W03G11.4 [Caenorhabditis elegans] 0.0
blast CAE69871 Hypothetical protein CBG16205 [Caenorhabditis briggsae] 1.0E-108
Sequence
Target Sequence 
>C. ELEGANS:181153_S_AT
ggcaatgacactgacctgtggccaaatgtgtggaagacttgtgcccgtcgagatgatgga
ccaaaccgtctactattatgactacgacactgttagctttttgtcaagagaggagctcat
caatttgttgatgctttgtgagccggaccaaattgaagacattatggttgcttcgtcgtt
tccaagcaaattccatcgtgagacaccggagcagatgttgcaacgtaacaagcactatca
gcatctgatgcatcgtccgcagatctttcttcgtcgcactgattatatgtcgtgtagtat
tgatgatgaagatttcacttttccatacttcgaatctgttgataatgagcacaacaagcg
attgacactcgaacgtcaactaaacgacgacaacgtcgaccacgaagaaatgggtgccct
catcagaaccatcagtcaagatctagaagaagctgaacgtcagaatgggcttgaattcgt
gcaccgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCAATGACACTGACCTGTGGCCAA 297 535 840 Antisense
TGTGTGGAAGACTTGTGCCCGTCGA 680 555 866 Antisense
GATGATGGACCAAACCGTCTACTAT 275 407 891 Antisense
ACATTATGGTTGCTTCGTCGTTTCC 612 103 998 Antisense
GTCGTTTCCAAGCAAATTCCATCGT 686 471 1014 Antisense
ATTCCATCGTGAGACACCGGAGCAG 575 5 1029 Antisense
ATCTGATGCATCGTCCGCAGATCTT 577 33 1082 Antisense
ATCTTTCTTCGTCGCACTGATTATA 27 33 1102 Antisense
AAGATTTCACTTTTCCATACTTCGA 680 155 1148 Antisense
AGAAATGGGTGCCCTCATCAGAACC 183 73 1245 Antisense
GAATGGGCTTGAATTCGTGCACCGC 296 333 1302 Antisense
Sequence Source Affymetrix Proprietary Database