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[181152_at]

Description T08A9.7 /REP_DB=WormBase Gene ID /WP=CE04922 /TR=Q22336 /GB=AAA81414.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 04      6grp_high1_10_10 > 21      4grp_highest_8_8 > 34      4grp_high_8_8 > 57      6grp_highest_nonorm > 16      6grp_total > 32      4grp_total > 62      6grp_cgc > 70      6grp_high1_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5811
1 2 3 4 range
A 7040.8
(2.5)
P 		5436.9
(0.4)
P 		7452.1
(3)
P 		2754.5
(-3)
P 		4698
B 8565.6
(3)
P 		6496.3
(-1.9)
P 		8032.7
(1.7)
P 		6052.4
(-3)
P 		2513
C 8338.6
(3)
P 		6829.4
(-1.2)
P 		6205.2
(-3)
P 		6631.4
(-1.8)
P 		2133
avr 7981.7
(3) 		6254.2
(-0.7) 		7230
(1.4) 		5146.1
(-3) 		2836

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7477
1 2 3 4 5 6 range
A 8835
(0.8)
P 		7911.9
(0.1)
P 		11489.3
(3)
P 		7597.5
(-0.2)
P 		6516.2
(-1)
P 		4116.7
(-3)
P 		7373
B 8333.7
(1.5)
P 		7804
(0.9)
P 		9802.7
(3)
P 		7218.2
(0.3)
P 		6922.3
(0)
P 		4012
(-3)
P 		5791
C 8412.5
(2.7)
P 		7835
(1.8)
P 		8601.3
(3)
P 		7388
(1)
P 		6585.5
(-0.3)
P 		4898
(-3)
P 		3703
avr 8527.1
(1.5) 		7850.3
(0.7) 		9964.4
(3) 		7401.2
(0.3) 		6674.7
(-0.5) 		4342.2
(-3) 		5622
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2357
1 2 3 4 range
A 2563.6
(3)
P 		1180.2
(-0.8)
P 		1948.1
(1.3)
P 		403.2
(-3)
P 		2160
B 2731.5
(3)
P 		1604.4
(-1.7)
P 		1861.4
(-0.6)
P 		1289.8
(-3)
P 		1442
C 2760.3
(3)
P 		1963.5
(0.1)
P 		2162.7
(0.8)
P 		1118.2
(-3)
P 		1642
avr 2685.1
(3) 		1582.7
(-0.8) 		1990.7
(0.6) 		937.1
(-3) 		1748

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2116
1 2 3 4 5 6 range
A 1628.7
(-0.9)
P 		2813.9
(3)
P 		2502.1
(2)
P 		1926.9
(0.1)
P 		1966.3
(0.2)
P 		1002.3
(-3)
P 		1812
B 2899.7
(3)
P 		2597.6
(1.7)
P 		2380.4
(0.8)
P 		1911.8
(-1.2)
P 		2812.4
(2.6)
P 		1496.1
(-3)
P 		1404
C 3118.1
(3)
P 		2390.7
(0.3)
P 		2189.2
(-0.4)
P 		1485.7
(-3)
P 		2131
(-0.6)
P 		1639.7
(-2.4)
P 		1632
avr 2548.8
(2.7) 		2600.7
(3) 		2357.2
(1.8) 		1774.8
(-1.1) 		2303.2
(1.5) 		1379.4
(-3) 		1221
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181152_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16379
Sequence Type Exemplar sequence
Representative Public ID T08A9.7 NCBI
Target Description T08A9.7 /REP_DB=WormBase Gene ID /WP=CE04922 /TR=Q22336 /GB=AAA81414.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076834, NM_171721
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000001752 ENSEMBL cdna:SNAP chromosome:CEL140:X:7314950:7316688:-1 11/11 None
GENEFINDER00000001762 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:7314950:7316688:-1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_171721 4/11 Cross Hyb Matching Probes None
NM_076834 7/11 Cross Hyb Matching Probes None
T08A9.7.1 7/11 Cross Hyb Matching Probes None
T08A9.7.2 7/11 Cross Hyb Matching Probes None
T08A9.12 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:7314948-7316687(-) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast B89567 protein T08A9.7 [imported] - Caenorhabditis elegans 1.0E-106
blast NP_509235 SaPosin-like Protein family member (spp-3) [Caenorhabditis elegans] gb|AAM69087.1| Saposin-like protein family protein 3 [Caenorhabditis elegans] 6.0E-52
blast NP_741832 SaPosin-like Protein family member (spp-2) [Caenorhabditis elegans] gb|AAM69085.1| Saposin-like protein family protein 2 [Caenorhabditis elegans] 3.0E-45
Protein Domains
Database ID Description E-Value
Pfam IPR007856 EMBL-EBI Saposin-like type B, 1 7.8E-4
Pfam IPR008138 EMBL-EBI Saposin-like type B, 2 6.8E-11
Pfam IPR008138 EMBL-EBI Saposin-like type B, 2 9.8E-14
Sequence
Target Sequence 
>C. ELEGANS:181152_AT
gaagactgtacttgtgcttgctgctgttgcagccgttgctctctgcgttgttcttccaaa
agaaagaagctcgttgggatgccaaatgtgtgaacttgctgtgaagacttatgatggatc
tgcggataaggacgtgacaagtatcaagaaagatttcgacaccgagtgcaagaaactttt
ccacgcgattccatttgctccacaggagtgtgaacattatgtgaacgagaagctggaccc
tatcatcaaggagcttgaaagcggaactgcaccaaaggatgtgtgcaagaaacttggaga
atgtccaaaaactatgaaaacttatatccttcttgccgccgttactcttgccgttttttt
ctcatcgacagaggctaatggaattgaatgtgagatgtgcaagatgtctgtcaagattgt
tgttccaatgcttggagaagacactgaatcaattaagaaggccgtcgacgctgaatgcaa
gaaggaattccacagcattccattcggaactcaagagtgcaaaaagttcattgacaccaa
gctcgacccaatcattcacgaactcgagaacggaactgctccatct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGACTGTACTTGTGCTTGCTGCT 528 339 15 Antisense
TGTGCTTGCTGCTGTTGCAGCCGTT 292 557 27 Antisense
CGATTCCATTTGCTCCACAGGAGTG 83 249 200 Antisense
GAACGAGAAGCTGGACCCTATCATC 306 347 237 Antisense
TGAAAACTTATATCCTTCTTGCCGC 316 573 329 Antisense
TGCCGTTTTTTTCTCATCGACAGAG 224 585 363 Antisense
GATGTCTGTCAAGATTGTTGTTCCA 241 409 417 Antisense
GGCCGTCGACGCTGAATGCAAGAAG 79 543 474 Antisense
GAATTCCACAGCATTCCATTCGGAA 103 325 499 Antisense
AAGTTCATTGACACCAAGCTCGACC 353 157 538 Antisense
ACTCGAGAACGGAACTGCTCCATCT 437 99 576 Antisense
Sequence Source Affymetrix Proprietary Database