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[181151_at]

Description C26B9.2 /REP_DB=WormBase Gene ID /WP=CE04096 /TR=Q18201 /GB=AAA82456.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 81      4grp_total > 48      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 135
1 2 3 4 range
A 32.2
(-3)
A 		81.5
(-0.6)
P 		157.1
(3)
P 		84.1
(-0.5)
A 		125
B 22.1
(-3)
A 		152.4
(3)
P 		143.7
(2.6)
P 		58.3
(-1.3)
A 		130
C 38.7
(-2.2)
A 		151
(3)
P 		143.1
(2.6)
P 		21.7
(-3)
A 		129
avr 31
(-3) 		128.3
(2) 		148
(3) 		54.7
(-1.8) 		117

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 302
1 2 3 4 5 6 range
A 16.3
(-3)
A 		168.8
(0.7)
P 		155.8
(0.4)
P 		244.3
(2.6)
P 		261.5
(3)
P 		100.7
(-0.9)
M 		245
B 23.5
(-3)
A 		87.7
(-1.2)
A 		50.6
(-2.3)
A 		208.2
(2.1)
P 		242.1
(3)
P 		47.6
(-2.3)
P 		219
C 44.9
(-3)
A 		152.1
(-0.6)
P 		99.4
(-1.8)
P 		318.1
(3)
P 		185.9
(0.1)
P 		50.9
(-2.9)
A 		273
avr 28.2
(-3) 		136.2
(-0.2) 		101.9
(-1.1) 		256.9
(3) 		229.8
(2.3) 		66.4
(-2) 		229
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 46
1 2 3 4 range
A 11.7
(-3)
A 		17.7
(-1.8)
P 		41.1
(3)
P 		12.3
(-2.9)
A 		29
B 7
(-3)
A 		37.6
(3)
P 		33.3
(2.2)
P 		12.4
(-1.9)
A 		31
C 12.8
(-1.8)
A 		43.4
(2.2)
P 		49.9
(3)
P 		3.7
(-3)
A 		46
avr 10.5
(-2.8) 		32.9
(1.4) 		41.4
(3) 		9.5
(-3) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 95
1 2 3 4 5 6 range
A 3
(-3)
A 		60
(1.5)
P 		33.9
(-0.6)
P 		62
(1.7)
P 		78.9
(3)
P 		24.5
(-1.3)
M 		76
B 8.2
(-3)
A 		29.2
(-1.6)
A 		12.3
(-2.7)
A 		55.2
(0.1)
P 		98.4
(3)
P 		17.7
(-2.4)
P 		90
C 16.6
(-3)
A 		46.4
(0.8)
P 		25.3
(-1.9)
P 		64
(3)
P 		60.1
(2.5)
P 		17
(-2.9)
A 		47
avr 9.3
(-3) 		45.2
(0.1) 		23.8
(-1.8) 		60.4
(1.4) 		79.1
(3) 		19.7
(-2.1) 		70
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181151_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16943
Sequence Type Exemplar sequence
Representative Public ID C26B9.2 NCBI
Target Description C26B9.2 /REP_DB=WormBase Gene ID /WP=CE04096 /TR=Q18201 /GB=AAA82456.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076505(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076505 NCBI Caenorhabditis elegans C26B9.2 (C26B9.2) mRNA, complete cds. 11/11 None
GENEFINDER00000015902 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:5340304:5342881:1 11/11 None
C26B9.2 ENSEMBL cdna:known chromosome:CEL140:X:5340304:5341974:1 gene:C26B9.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000015898 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:5340304-5341975(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C26B9.2
Entrez Gene 182931 Entrez gene
SwissProt Q18201 EMBL-EBI
WormBase CE04096 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA82456 Hypothetical protein C26B9.2 [Caenorhabditis elegans] ref|NP_508906.1| C26B9.2 [Caenorhabditis elegans] 1.0E-154
blast AAA82456 Hypothetical protein C26B9.2 [Caenorhabditis elegans] ref|NP_508906.1| C26B9.2 [Caenorhabditis elegans] 1.0E-149
blast CAE68737 Hypothetical protein CBG14667 [Caenorhabditis briggsae] 1.0E-124
blast CAE68737 Hypothetical protein CBG14667 [Caenorhabditis briggsae] 1.0E-123
blast CAE67492 Hypothetical protein CBG13000 [Caenorhabditis briggsae] 6.0E-50
blast CAE67492 Hypothetical protein CBG13000 [Caenorhabditis briggsae] 1.0E-49
Sequence
Target Sequence 
>C. ELEGANS:181151_AT
ttaccaggtggctacaatcctcttcctggaagaacttcctttggtgattactggcctcta
atgcccatgtcaaaccaatatcatgcagcggtgacctatgatacctcaaaaggaaggcat
gttggcggagatatacttattcccgttccatattggaataattttttaaacatcggagga
cattacatcgaacgtttccaggaagaatgggttaaagtcgggtacattaatagcccagtt
aacatgctcggacttacaaaggaccaaatagcaagactactctcagatccatcactgcat
tataatagacaaatccatccaaaactaccagtaggagctcttccgcgagaatacgagcca
atagcctgtaagcctccattatgtaacccgtatcaaggaactcttggagttggggtagaa
gcaaattaccacatagaggacggagtagaaggcgaattagatctgcccattccaattgga
aaagacattgcctatcgattccca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTACCAGGTGGCTACAATCCTCTTC 550 669 232 Antisense
ACTTCCTTTGGTGATTACTGGCCTC 134 103 265 Antisense
TACTGGCCTCTAATGCCCATGTCAA 466 647 280 Antisense
GCAGCGGTGACCTATGATACCTCAA 476 313 316 Antisense
GGAGATATACTTATTCCCGTTCCAT 33 517 358 Antisense
TAGCCCAGTTAACATGCTCGGACTT 389 639 462 Antisense
CAAGACTACTCTCAGATCCATCACT 244 185 503 Antisense
AAACTACCAGTAGGAGCTCTTCCGC 144 129 553 Antisense
ACGAGCCAATAGCCTGTAAGCCTCC 358 91 584 Antisense
AAGCCTCCATTATGTAACCCGTATC 469 147 601 Antisense
AAAAGACATTGCCTATCGATTCCCA 51 133 711 Antisense
Sequence Source Affymetrix Proprietary Database