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[181150_s_at]

Description T22B7.4 /REP_DB=WormBase Gene ID /WP=CE13946 /TR=Q23039 /GB=AAB04591.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 12      6grp_high1_10_10 > 20      4grp_highest_8_8 > 46      4grp_high_8_8 > 11      6grp_highest_nonorm > 81      6grp_total > 40      4grp_total > 21      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 260
1 2 3 4 range
A 338.7
(1)
P 		266.7
(-0.8)
P 		182
(-3)
P 		416.3
(3)
P 		234
B 268.7
(1.2)
P 		187.7
(-1.8)
P 		156.5
(-3)
P 		317.3
(3)
P 		161
C 332.8
(2)
P 		203.6
(-2.7)
P 		196.4
(-3)
P 		361.3
(3)
P 		165
avr 313.4
(1.3) 		219.3
(-1.7) 		178.3
(-3) 		365
(3) 		187

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 187
1 2 3 4 5 6 range
A 316.5
(2.6)
P 		312.9
(2.5)
P 		325.7
(3)
P 		267.8
(0.7)
P 		271.3
(0.8)
P 		176.3
(-3)
P 		149
B 362.1
(3)
P 		275.9
(0.2)
P 		344.6
(2.4)
P 		265.5
(-0.1)
P 		175
(-3)
P 		247.9
(-0.7)
P 		187
C 265.1
(0.2)
P 		299.9
(1.4)
P 		331
(2.5)
P 		346.1
(3)
P 		175.1
(-3)
P 		305.7
(1.6)
P 		171
avr 314.6
(2.1) 		296.2
(1.2) 		333.8
(3) 		293.1
(1.1) 		207.1
(-3) 		243.3
(-1.3) 		127
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 87
1 2 3 4 range
A 123.3
(3)
P 		57.9
(-2.2)
P 		47.6
(-3)
P 		60.9
(-1.9)
P 		76
B 85.7
(3)
P 		46.4
(-1.8)
P 		36.3
(-3)
P 		67.6
(0.8)
P 		49
C 110.2
(3)
P 		58.5
(-3)
P 		68.5
(-1.8)
P 		60.9
(-2.7)
P 		52
avr 106.4
(3) 		54.3
(-2.6) 		50.8
(-3) 		63.1
(-1.7) 		56

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 83
1 2 3 4 5 6 range
A 58.3
(-1.6)
P 		111.3
(3)
P 		70.9
(-0.5)
P 		67.9
(-0.8)
P 		81.9
(0.4)
P 		42.9
(-3)
P 		68
B 126
(3)
P 		91.8
(-0.7)
P 		83.7
(-1.6)
P 		70.3
(-3)
P 		71.1
(-2.9)
P 		92.5
(-0.6)
P 		56
C 98.3
(2.5)
P 		91.5
(1.6)
P 		84.2
(0.6)
P 		69.6
(-1.3)
P 		56.7
(-3)
P 		102.3
(3)
P 		46
avr 94.2
(2.2) 		98.2
(3) 		79.6
(-0.9) 		69.3
(-3) 		69.9
(-2.9) 		79.2
(-0.9) 		29
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 181150_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16325
Sequence Type Exemplar sequence
Representative Public ID T22B7.4 NCBI
Target Description T22B7.4 /REP_DB=WormBase Gene ID /WP=CE13946 /TR=Q23039 /GB=AAB04591.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076548(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076548 NCBI Caenorhabditis elegans T22B7.4 (T22B7.4) mRNA, complete cds. 11/11 None
SNAP00000005783 ENSEMBL cdna:SNAP chromosome:CEL140:X:5638739:5641321:-1 11/11 None
GENEFINDER00000005795 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:5638739:5641321:-1 11/11 None
T22B7.4 ENSEMBL cdna:known chromosome:CEL140:X:5638652:5641321:-1 gene:T22B7.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:5638738-5641321(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T22B7.4
Entrez Gene 180831 Entrez gene
SwissProt Q23039 EMBL-EBI
WormBase CE13946 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB04591 Hypothetical protein T22B7.4 [Caenorhabditis elegans] ref|NP_508949.1| T22B7.4 [Caenorhabditis elegans] 0.0
blast CAE68774 Hypothetical protein CBG14716 [Caenorhabditis briggsae] 3.0E-83
blast CAE58581 Hypothetical protein CBG01747 [Caenorhabditis briggsae] 6.0E-34
Protein Domains
Database ID Description E-Value
Pfam IPR010750 EMBL-EBI Protein of unknown function DUF1325 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:181150_S_AT
ccctgctccaaaacctcttgaaacagtgttctacgagtccacggatgatgaactgaaaga
caaaaaaacaaggcgaagaaagaagaaattaaatgaaaaaccgaataagatcaagatcat
cagagccagggtgccaccacacaagaaaatccgttcaacgcgccaatttggtaaacgaag
agtgaaacgaaaaccaaaagttccagtgggctcatcgaacagtgagcaagcaaaatgtaa
actcgagaaggcgaattctgaagaaaagaaaactgaagtttcaagtgaagatgtgttttt
ggatgccaacgaagaatttccaggagttagcacatatgggttggaagaggagcaggatga
cagtgagaaagaagtttgtaaaaaacatagaaacaaagatgataaacgtgttgatgatgt
agaagattcgaatgatttggaagaaaacgcatcgtctgcaccaatgcgtagcactagtga
gtgtggggatgaaagagaaaggagaaacagctctagtgactccagtgattcacaatccgg
aattagtatctcggaccatgaacggttgca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCCTGCTCCAAAACCTCTTGAAACA 394 259 1020 Antisense
AACAGTGTTCTACGAGTCCACGGAT 235 137 1041 Antisense
AAGATCATCAGAGCCAGGGTGCCAC 161 155 1132 Antisense
GTGCCACCACACAAGAAAATCCGTT 179 479 1150 Antisense
AAATCCGTTCAACGCGCCAATTTGG 479 115 1166 Antisense
TTCCAGTGGGCTCATCGAACAGTGA 318 701 1220 Antisense
GGAAGAAAACGCATCGTCTGCACCA 582 529 1458 Antisense
TCGTCTGCACCAATGCGTAGCACTA 124 603 1471 Antisense
GAAACAGCTCTAGTGACTCCAGTGA 205 357 1523 Antisense
GACTCCAGTGATTCACAATCCGGAA 545 373 1537 Antisense
GTATCTCGGACCATGAACGGTTGCA 419 453 1565 Antisense
Sequence Source Affymetrix Proprietary Database