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[181149_at]

Description F40A3.1 /REP_DB=WormBase Gene ID /WP=CE10142 /TR=O16267 /GB=AAB65321.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 0      6grp_high1_10_10 > 09      4grp_highest_8_8 > 60      4grp_high_8_8 > 26      6grp_highest_nonorm > 74      6grp_total > 91      4grp_total > 38      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 598
1 2 3 4 range
A 972.5
(3)
P 		653.9
(-1.8)
P 		571.4
(-3)
P 		673.1
(-1.5)
P 		401
B 1036.1
(3)
P 		638.3
(-1)
P 		438.6
(-3)
P 		729.7
(-0.1)
P 		598
C 931.2
(3)
P 		830.3
(0.3)
P 		704.4
(-3)
P 		787.7
(-0.8)
P 		227
avr 979.9
(3) 		707.5
(-1) 		571.5
(-3) 		730.2
(-0.7) 		408

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 447
1 2 3 4 5 6 range
A 891.5
(3)
P 		692.5
(0.3)
P 		610.9
(-0.8)
P 		616.1
(-0.7)
P 		738.4
(0.9)
P 		444.9
(-3)
P 		447
B 682.5
(0.1)
P 		717
(0.6)
P 		488.8
(-3)
P 		780.7
(1.7)
P 		864.7
(3)
P 		571.3
(-1.7)
P 		376
C 573.1
(-2.8)
P 		673.4
(0)
P 		643.3
(-0.8)
P 		776.5
(3)
P 		566.9
(-3)
P 		620.9
(-1.5)
P 		210
avr 715.7
(2.7) 		694.3
(2) 		581
(-1.8) 		724.4
(3) 		723.3
(3) 		545.7
(-3) 		179
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 256
1 2 3 4 range
A 354.1
(3)
P 		141.9
(-2)
P 		149.4
(-1.8)
P 		98.5
(-3)
P 		256
B 330.4
(3)
P 		157.6
(-1.5)
P 		101.6
(-3)
P 		155.5
(-1.6)
P 		229
C 308.3
(3)
P 		238.7
(0.6)
P 		245.5
(0.9)
P 		132.8
(-3)
P 		176
avr 330.9
(3) 		179.4
(-1.5) 		165.5
(-1.9) 		128.9
(-3) 		202

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 243
1 2 3 4 5 6 range
A 164.3
(-0.6)
P 		246.3
(3)
P 		133
(-1.9)
P 		156.3
(-0.9)
P 		222.8
(2)
P 		108.3
(-3)
P 		138
B 237.5
(0.1)
P 		238.6
(0.1)
P 		118.7
(-3)
P 		206.8
(-0.7)
P 		351.3
(3)
P 		213
(-0.6)
P 		233
C 212.4
(3)
P 		205.5
(2.3)
P 		163.7
(-2.2)
P 		156.2
(-3)
P 		183.4
(-0.1)
P 		207.8
(2.5)
P 		56
avr 204.7
(0.5) 		230.1
(1.8) 		138.5
(-3) 		173.1
(-1.2) 		252.5
(3) 		176.4
(-1) 		114
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181149_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12229
Sequence Type Exemplar sequence
Representative Public ID F40A3.1 NCBI
Target Description F40A3.1 /REP_DB=WormBase Gene ID /WP=CE10142 /TR=O16267 /GB=AAB65321.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072632(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072632 NCBI Caenorhabditis elegans F40A3.1 (F40A3.1) mRNA, complete cds. 11/11 None
SNAP00000025358 ENSEMBL cdna:SNAP chromosome:CEL140:V:7896714:7897844:1 11/11 None
GENEFINDER00000025363 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7896669:7897844:1 11/11 None
F40A3.1 ENSEMBL cdna:known chromosome:CEL140:V:7896669:7898099:1 gene:F40A3.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7896669-7897845(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F40A3.1
Entrez Gene 185506 Entrez gene
SwissProt O16267 EMBL-EBI
WormBase CE10142 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB65321 Hypothetical protein F40A3.1 [Caenorhabditis elegans] ref|NP_505033.1| F40A3.1 [Caenorhabditis elegans] 1.0E-126
blast AAB65321 Hypothetical protein F40A3.1 [Caenorhabditis elegans] ref|NP_505033.1| F40A3.1 [Caenorhabditis elegans] 1.0E-109
blast CAE73156 Hypothetical protein CBG20549 [Caenorhabditis briggsae] 1.0E-83
blast CAE73156 Hypothetical protein CBG20549 [Caenorhabditis briggsae] 6.0E-83
Sequence
Target Sequence 
>C. ELEGANS:181149_AT
acatcatgccaatcgtgctttcggtgcgaggaagcaggatgcgggatggatggcaaaaaa
tgaggggaaaacatttagagttgtcatcaaaaatattgaaatttttcagatcaatgactg
ggaactaattggaagcagaacatattcttggaaaggaaacgaagtattaagatgtaaaca
ttgggataaagttgcaatcagatggcacttatcaacatgtaccgaacatggagtttgcga
tggaggaaccaatgtggattacgctactcgagcccaaaactggaccgagatgccagtttg
gagaaatgcgttcacctatgtgcagattccgggtcaactgcagaaaacaaaatttctacg
actaggtcttactggctacgacagtaggaaaacccaactcgaagcattttcaccactaaa
aattgatgtggattggagatggcaagttactcgggacggatgcaataatttcgttgtcag
aatgtccgcaatgagcatgatcaacgaaaaaatgcgtccaaaattggagcgattctgccg
tctct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACATCATGCCAATCGTGCTTTCGGT 51 107 66 Antisense
GGCACTTATCAACATGTACCGAACA 486 535 269 Antisense
GGAACCAATGTGGATTACGCTACTC 206 531 310 Antisense
TACGCTACTCGAGCCCAAAACTGGA 496 647 325 Antisense
GGAGAAATGCGTTCACCTATGTGCA 636 519 365 Antisense
CCTATGTGCAGATTCCGGGTCAACT 214 265 380 Antisense
TACGACTAGGTCTTACTGGCTACGA 233 647 422 Antisense
AACCCAACTCGAAGCATTTTCACCA 90 147 456 Antisense
GATGGCAAGTTACTCGGGACGGATG 14 407 503 Antisense
ATTTCGTTGTCAGAATGTCCGCAAT 547 15 533 Antisense
AAATTGGAGCGATTCTGCCGTCTCT 396 115 586 Antisense
Sequence Source Affymetrix Proprietary Database