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[181146_at] cell differentiation family, Rcd1-like

Description C26E6.3 /REP_DB=WormBase Gene ID /WP=CE01161 /TR=Q18224 /GB=AAA21157.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 47      4grp_total > 23      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 72
1 2 3 4 range
A 55.1
(1.6)
A 		26.3
(-1.3)
A 		8.6
(-3)
A 		69.6
(3)
A 		61
B 76.2
(1.9)
A 		80.2
(3)
A 		58.9
(-2.8)
A 		58.1
(-3)
A 		22
C 71.4
(3)
A 		13.9
(-3)
A 		55.9
(1.4)
A 		68
(2.6)
A 		58
avr 67.6
(3) 		40.1
(-3) 		41.1
(-2.8) 		65.2
(2.5) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 81
1 2 3 4 5 6 range
A 62.2
(1.5)
A 		62
(1.4)
A 		34.9
(-0.9)
A 		48.3
(0.3)
A 		10.4
(-3)
A 		80.2
(3)
A 		70
B 69.3
(3)
A 		51.5
(1.3)
A 		56.6
(1.8)
A 		7.5
(-3)
A 		61.3
(2.2)
A 		64.6
(2.5)
A 		62
C 50.8
(-2.7)
A 		64.9
(-0.6)
A 		53.9
(-2.2)
A 		62.8
(-0.9)
A 		48.9
(-3)
A 		88.1
(3)
A 		39
avr 60.8
(0.4) 		59.5
(0.1) 		48.5
(-1.6) 		39.5
(-3) 		40.2
(-2.9) 		77.6
(3) 		38
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 20.1
(3)
A 		5.7
(-1.8)
A 		2.2
(-3)
A 		10.2
(-0.3)
A 		18
B 24.3
(3)
A 		19.8
(0.7)
A 		13.6
(-2.4)
A 		12.4
(-3)
A 		12
C 23.6
(3)
A 		4
(-3)
A 		19.5
(1.7)
A 		11.5
(-0.7)
A 		20
avr 22.7
(3) 		9.8
(-3) 		11.8
(-2.1) 		11.4
(-2.3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 11.5
(-0.3)
A 		22.1
(3)
A 		7.6
(-1.6)
A 		12.3
(-0.1)
A 		3.1
(-3)
A 		19.5
(2.2)
A 		19
B 24.1
(2.8)
A 		17.2
(1)
A 		13.7
(0.1)
A 		2
(-3)
A 		24.9
(3)
A 		24.1
(2.8)
A 		23
C 18.8
(-0.8)
A 		19.8
(-0.4)
A 		13.7
(-2.6)
A 		12.6
(-3)
A 		15.8
(-1.9)
A 		29.5
(3)
A 		17
avr 18.1
(0.5) 		19.7
(1.2) 		11.7
(-1.9) 		9
(-3) 		14.6
(-0.8) 		24.4
(3) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181146_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6195
Sequence Type Exemplar sequence
Representative Public ID C26E6.3 NCBI
Target Description C26E6.3 /REP_DB=WormBase Gene ID /WP=CE01161 /TR=Q18224 /GB=AAA21157.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Consensus/Exemplar Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade C annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065647
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000014707 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:4944500:4946621:1 None
SNAP00000014704 ENSEMBL cdna:SNAP chromosome:CEL140:III:4944774:4946621:1 None
C26E6.3.1 ENSEMBL cdna:known chromosome:CEL140:III:4944471:4947266:1 gene:C26E6.3 None
C26E6.3.2 ENSEMBL cdna:known chromosome:CEL140:III:4944473:4947266:1 gene:C26E6.3 None
NM_065647 NCBI Caenorhabditis elegans C26E6.3 (C26E6.3) mRNA, complete cds. None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4944499-4947713(+) 100.0 100.0
Public Domain and Genome References
Gene Title cell differentiation family, Rcd1-like
Ensembl C26E6.3
Entrez Gene 175669 Entrez gene
SwissProt Q18224 EMBL-EBI
WormBase CE32144 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:257984_AT rcd1-like cell differentiation protein, putative at
CANINE_2:CFAAFFX.22808.1.S1_AT similar to rcd1 (required for cell differentiation) homolog 1 (S. pombe) (predicted) cfa
DROSOPHILA_2:1631578_S_AT dm
DROSGENOME1:145383_AT dm
CHICKEN:GGA.3768.1.S1_S_AT RCD1 required for cell differentiation1 homolog (S. pombe) gga
CHICKEN:GGA.3768.2.S1_AT RCD1 required for cell differentiation1 homolog (S. pombe) gga
CHICKEN:GGAAFFX.12327.1.S1_AT RCD1 required for cell differentiation1 homolog (S. pombe) gga
CHICKEN:GGAAFFX.20199.1.S1_S_AT RCD1 required for cell differentiation1 homolog (S. pombe) gga
HG-U95AV2:722_AT RCD1 required for cell differentiation1 homolog (S. pombe) hs
HC-G110:722_AT RCD1 required for cell differentiation1 homolog (S. pombe) hs
HU35KSUBA:D87957_AT RCD1 required for cell differentiation1 homolog (S. pombe) hs
HUGENEFL:D87957_AT RCD1 required for cell differentiation1 homolog (S. pombe) hs
U133_X3P:HS2.432483.2.S1_3P_AT RCD1 required for cell differentiation1 homolog (S. pombe) hs
U133_X3P:HS2.432483.1.S1_3P_S_AT RCD1 required for cell differentiation1 homolog (S. pombe) hs
U133_X3P:HS.94211.0.S2_3P_AT RCD1 required for cell differentiation1 homolog (S. pombe) hs
HG-U133_PLUS_2:1553510_S_AT RCD1 required for cell differentiation1 homolog (S. pombe) hs
HG-U133_PLUS_2:1554080_AT RCD1 required for cell differentiation1 homolog (S. pombe) hs
HG-U133A_2:213098_AT RCD1 required for cell differentiation1 homolog (S. pombe) hs
HG-U133_PLUS_2:213098_AT RCD1 required for cell differentiation1 homolog (S. pombe) hs
HG-U133A:213098_AT RCD1 required for cell differentiation1 homolog (S. pombe) hs
HG-U95D:69717_AT RCD1 required for cell differentiation1 homolog (S. pombe) hs
HG-U133A_2:213179_AT RCD1 required for cell differentiation1 homolog (S. pombe) hs
HG-U133_PLUS_2:213179_AT RCD1 required for cell differentiation1 homolog (S. pombe) hs
HG-U133A:213179_AT RCD1 required for cell differentiation1 homolog (S. pombe) hs
HG-U133A_2:213903_S_AT RCD1 required for cell differentiation1 homolog (S. pombe) hs
HG-FOCUS:213903_S_AT RCD1 required for cell differentiation1 homolog (S. pombe) hs
HG-U133_PLUS_2:213903_S_AT RCD1 required for cell differentiation1 homolog (S. pombe) hs
HG-U133A:213903_S_AT RCD1 required for cell differentiation1 homolog (S. pombe) hs
HG-U133_PLUS_2:236684_AT RCD1 required for cell differentiation1 homolog (S. pombe) hs
HG-U133B:236684_AT RCD1 required for cell differentiation1 homolog (S. pombe) hs
HG-U95AV2:33194_AT RCD1 required for cell differentiation1 homolog (S. pombe) hs
HG-U95AV2:33844_AT RCD1 required for cell differentiation1 homolog (S. pombe) hs
HG-U95E:83096_AT RCD1 required for cell differentiation1 homolog (S. pombe) hs
HU35KSUBA:AA160724_AT RCD1 required for cell differentiation1 homolog (S. pombe) hs
HU35KSUBD:RC_N21670_S_AT RCD1 required for cell differentiation1 homolog (S. pombe) hs
U133_X3P:HS.148767.0.A1_3P_AT RCD1 required for cell differentiation1 homolog (S. pombe) hs
U133_X3P:HS.94211.1.A1_3P_A_AT RCD1 required for cell differentiation1 homolog (S. pombe) hs
MG-U74BV2:107417_AT rcd1 (required for cell differentiation) homolog 1 (S. pombe) mm
MOE430A:1450887_AT rcd1 (required for cell differentiation) homolog 1 (S. pombe) mm
MOUSE430A_2:1450887_AT rcd1 (required for cell differentiation) homolog 1 (S. pombe) mm
MOUSE430_2:1450887_AT rcd1 (required for cell differentiation) homolog 1 (S. pombe) mm
MG-U74BV2:165245_I_AT Rcd1 (required for cell differentiation) homolog 1 (S. pombe) (Rqcd1), mRNA mm
MU19KSUBB:TC28424_AT Rcd1 (required for cell differentiation) homolog 1 (S. pombe) (Rqcd1), mRNA mm
RG-U34B:RC_AI044879_AT rcd1 (required for cell differentiation) homolog 1 (S. pombe) (predicted) rn
RG-U34C:RC_AI178068_AT rcd1 (required for cell differentiation) homolog 1 (S. pombe) (predicted) rn
RAE230A:1374331_AT rcd1 (required for cell differentiation) homolog 1 (S. pombe) (predicted) rn
RAT230_2:1374331_AT rcd1 (required for cell differentiation) homolog 1 (S. pombe) (predicted) rn
RAE230B:1392544_AT rcd1 (required for cell differentiation) homolog 1 (S. pombe) (predicted) rn
RAT230_2:1392544_AT rcd1 (required for cell differentiation) homolog 1 (S. pombe) (predicted) rn
RAE230B:1397778_AT Rcd1 (required for cell differentiation) homolog 1 (S. pombe) (predicted) rn
RAT230_2:1397778_AT Rcd1 (required for cell differentiation) homolog 1 (S. pombe) (predicted) rn
RG-U34C:RC_AI070767_AT Rcd1 (required for cell differentiation) homolog 1 (S. pombe) (predicted) rn
YEAST_2:1779762_AT Evolutionarily conserved subunit of the CCR4-NOT complex involved in controlling mRNA initiation, elongation and degradation; binds Cdc39p Sc
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4182 carboxypeptidase A activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA21157 Hypothetical protein C26E6.3 [Caenorhabditis elegans] ref|NP_498048.2| C26E6.3 [Caenorhabditis elegans] 0.0
blast AAA21157 Hypothetical protein C26E6.3 [Caenorhabditis elegans] ref|NP_498048.2| C26E6.3 [Caenorhabditis elegans] 1.0E-177
blast CAE71309 Hypothetical protein CBG18198 [Caenorhabditis briggsae] 1.0E-160
blast AAA21157 Hypothetical protein C26E6.3 [Caenorhabditis elegans] ref|NP_498048.2| C26E6.3 [Caenorhabditis elegans] 1.0E-160
blast CAE71309 Hypothetical protein CBG18198 [Caenorhabditis briggsae] 1.0E-147
Protein Domains
Database ID Description E-Value
Pfam IPR007216 EMBL-EBI Cell differentiation proteins, Rcd1-like 1.0E-126
Pfam IPR007216 EMBL-EBI Cell differentiation proteins, Rcd1-like 6.2E-11
Pfam IPR007216 EMBL-EBI Cell differentiation proteins, Rcd1-like 1.0E-126
Pfam IPR007216 EMBL-EBI Cell differentiation proteins, Rcd1-like 6.2E-11
Pfam IPR007216 EMBL-EBI Cell differentiation proteins, Rcd1-like 3.0E-11
Sequence
Target Sequence 
>C. ELEGANS:181146_AT
tgacaatcgatgctccacgtggacaaggtgcagctcctggacaaatagtgaaaatgcgtg
cctctttagcactcaaacaatgtcttccggatcaattgaaagatttgacattcaagtcac
tactcaaggaggatccaagtacaatgaactggctgagacaactattgacaactcttgcca
cccctcacacttcccccgttcatctattttcggggggtctccctcatcttcttagtatgc
ggaaaagcccctgccctccgtcggggacgtcccttctctcacacatcatgtgttcttccg
tctgtttgcgcgcgcgcgcctcgcctcgtctcgccataacctctacagcaccaccaccac
caaccgcagcagcagcacccaatgattctatatttctcgaattcactctatatccttcaa
tctctccatctcttctccgcctttcaccatctgccataatgttgttgggcggcgggcggg
aggtctctccccttcttcactgtgtgattagtttccgcggtgac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGACAATCGATGCTCCACGTGGACA 282 571 782 Antisense
TGGACAAGGTGCAGCTCCTGGACAA 11 549 801 Antisense
AATGCGTGCCTCTTTAGCACTCAAA 264 167 834 Antisense
GCACTCAAACAATGTCTTCCGGATC 312 315 850 Antisense
ACAACTATTGACAACTCTTGCCACC 406 111 939 Antisense
CTCCCTCATCTTCTTAGTATGCGGA 131 235 1000 Antisense
CACACATCATGTGTTCTTCCGTCTG 618 193 1061 Antisense
AGCAGCAGCACCCAATGATTCTATA 602 73 1149 Antisense
AATTCACTCTATATCCTTCAATCTC 166 177 1181 Antisense
CCTTTCACCATCTGCCATAATGTTG 543 269 1221 Antisense
CTGTGTGATTAGTTTCCGCGGTGAC 175 239 1281 Antisense
Sequence Source Affymetrix Proprietary Database