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[181145_at]

Description F40F12.3 /REP_DB=WormBase Gene ID /WP=CE00618 /TR=Q20213 /GB=CAA82935.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 77      4grp_total > 25      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 88
1 2 3 4 range
A 4.7
(-3)
A 		20.3
(-1.9)
A 		27.5
(-1.4)
A 		92.3
(3)
A 		88
B 13.2
(-3)
A 		37.9
(3)
A 		26.1
(0.1)
A 		22.1
(-0.8)
A 		25
C 14.7
(-3)
A 		44
(3)
A 		26.5
(-0.6)
A 		38.7
(1.9)
A 		29
avr 10.9
(-3) 		34.1
(0.5) 		26.7
(-0.6) 		51
(3) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 76
1 2 3 4 5 6 range
A 10.4
(-2.6)
A 		47.9
(0.4)
A 		17.2
(-2)
A 		5
(-3)
A 		11.9
(-2.5)
A 		81.3
(3)
A 		76
B 11.1
(-2.4)
A 		20.8
(-1.3)
A 		10.6
(-2.4)
A 		5.3
(-3)
A 		23.8
(-1)
A 		61.2
(3)
P 		56
C 11.3
(-2.5)
A 		6
(-3)
A 		31.6
(-0.7)
A 		46.1
(0.7)
A 		63.6
(2.2)
A 		71.9
(3)
P 		66
avr 10.9
(-3) 		24.9
(-1.6) 		19.8
(-2.1) 		18.8
(-2.2) 		33.1
(-0.8) 		71.5
(3) 		61
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 1.7
(-3)
A 		4.4
(-1.6)
A 		7.2
(-0.2)
A 		13.5
(3)
A 		12
B 4.2
(-3)
A 		9.4
(3)
A 		6.1
(-0.8)
A 		4.7
(-2.4)
A 		5
C 4.9
(-3)
A 		12.6
(3)
A 		9.2
(0.4)
A 		6.5
(-1.8)
A 		8
avr 3.6
(-3) 		8.8
(3) 		7.5
(1.5) 		8.2
(2.3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 1.9
(-2.8)
A 		17
(2.1)
A 		3.7
(-2.2)
A 		1.3
(-3)
A 		3.6
(-2.3)
A 		19.8
(3)
A 		19
B 3.8
(-2.3)
A 		6.9
(-1.5)
A 		2.6
(-2.7)
A 		1.4
(-3)
A 		9.7
(-0.7)
A 		22.8
(3)
P 		21
C 4.2
(-2.4)
A 		1.8
(-3)
A 		8
(-1.3)
A 		9.3
(-1)
A 		20.6
(2.1)
A 		24.1
(3)
P 		22
avr 3.3
(-3) 		8.6
(-1.3) 		4.8
(-2.5) 		4
(-2.8) 		11.3
(-0.5) 		22.2
(3) 		19
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181145_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7239
Sequence Type Exemplar sequence
Representative Public ID F40F12.3 NCBI
Target Description F40F12.3 /REP_DB=WormBase Gene ID /WP=CE00618 /TR=Q20213 /GB=CAA82935.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066799(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066799 NCBI Caenorhabditis elegans F40F12.3 (F40F12.3) mRNA, complete cds. 11/11 None
SNAP00000010929 ENSEMBL cdna:SNAP chromosome:CEL140:III:9918536:9920755:-1 11/11 None
F40F12.3 ENSEMBL cdna:known chromosome:CEL140:III:9918536:9919959:-1 gene:F40F12.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000044194 1/11 Cross Hyb Matching Probes None
GENEFINDER00000010935 8/11 Cross Hyb Matching Probes None
C31H5.2 1/11 Cross Hyb Matching Probes None
ZK380.3 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9918531-9919955(-) 85.99 100.0
Public Domain and Genome References
Gene Title
Ensembl F40F12.3
Entrez Gene 185551 Entrez gene
SwissProt Q7JMS7 EMBL-EBI
WormBase CE00618 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA82935 Hypothetical protein F40F12.3 [Caenorhabditis elegans] ref|NP_499200.1| F40F12.3 [Caenorhabditis elegans] pir||S42832 F40F12.3 protein - Caenorhabditis elegans 1.0E-159
blast CAA82935 Hypothetical protein F40F12.3 [Caenorhabditis elegans] ref|NP_499200.1| F40F12.3 [Caenorhabditis elegans] pir||S42832 F40F12.3 protein - Caenorhabditis elegans 1.0E-150
blast CAA91345 Hypothetical protein K01A11.3 [Caenorhabditis elegans] ref|NP_497710.2| K01A11.3 [Caenorhabditis elegans] 2.0E-20
blast CAI79130 Hypothetical protein C07A9.13 [Caenorhabditis elegans] ref|NP_001021156.1| C07A9.13 [Caenorhabditis elegans] 1.0E-16
blast CAI79130 Hypothetical protein C07A9.13 [Caenorhabditis elegans] ref|NP_001021156.1| C07A9.13 [Caenorhabditis elegans] 2.0E-16
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_499200.1 1 299-321
F40F12.3 1 299-321
SNAP00000010929 1 292-314
Sequence
Target Sequence 
>C. ELEGANS:181145_AT
ctgcgacagctcttcataaatccacagctcagaacgggtgttaacaatgtctacaatggt
gtggaagctctaatcaaggacatctccactgagtgcatggaaacggaagaagctcgggag
ctgttttgcttacgaatcaacaaacgcgtcgtgaattgcacaggaggatgcaagccgtac
aaaatgtctccatcctaccgaacgccgtacatctcttgcaagttgaagaaagatgaaacc
ttccttgattgcgtggactcgagacaactcatctgtgggaaacaccgaagcggaaaagac
accggaacgcaggagcttcgcctaaatctcacgaaaaacaattcgaagtacgtatgggtg
cgagtgagtaagtccaatgaccaaccgatgaaaatgtgtaccatcaagccgatggtcttc
ctcgggcacacattccttctcgttgggttcgagcagattgtggggacgaataacattcgt
ccccacaatctgctcgaacttcacactactccactgacaactcccagcttcctgacccgc
ttctcaatagtcctcgcaattctgattctacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTGCGACAGCTCTTCATAAATCCAC 350 237 364 Antisense
CAAGGACATCTCCACTGAGTGCATG 652 183 438 Antisense
AGCTCGGGAGCTGTTTTGCTTACGA 569 79 474 Antisense
AGCCGTACAAAATGTCTCCATCCTA 96 83 536 Antisense
AAACCTTCCTTGATTGCGTGGACTC 511 123 599 Antisense
GACTCGAGACAACTCATCTGTGGGA 55 375 619 Antisense
AAAGACACCGGAACGCAGGAGCTTC 605 123 658 Antisense
GGAGCTTCGCCTAAATCTCACGAAA 465 521 675 Antisense
CCATCAAGCCGATGGTCTTCCTCGG 94 267 764 Antisense
ACATTCCTTCTCGTTGGGTTCGAGC 320 105 793 Antisense
TAGTCCTCGCAATTCTGATTCTACC 85 655 911 Antisense
Sequence Source Affymetrix Proprietary Database