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[181144_at]

Description Y79H2A.4 /REP_DB=WormBase Gene ID /WP=CE23093 /TR=Q9U1S1 /GB=CAB54506.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 56      4grp_high_8_8 > 22      6grp_total > 38      4grp_total > 27      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 91
1 2 3 4 range
A 60.1
(-1.5)
P 		93.7
(3)
P 		80.3
(1.2)
P 		48.6
(-3)
A 		45
B 72.3
(-3)
P 		89.6
(1.7)
P 		94.2
(3)
P 		73.1
(-2.8)
P 		22
C 97.7
(1)
P 		67.6
(-1)
P 		36.7
(-3)
A 		127.5
(3)
P 		91
avr 76.7
(-0.1) 		83.6
(3) 		70.4
(-3) 		83.1
(2.8) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 65
1 2 3 4 5 6 range
A 99
(3)
A 		75.1
(0.2)
P 		47.5
(-3)
A 		48.8
(-2.8)
A 		80.8
(0.9)
A 		48
(-2.9)
A 		52
B 74.9
(1.3)
P 		70.2
(0.7)
P 		63.2
(-0.2)
P 		86.4
(2.8)
P 		41.8
(-3)
P 		87.6
(3)
P 		46
C 69.1
(1.2)
P 		63.4
(0.6)
A 		61.2
(0.3)
A 		34.1
(-3)
A 		76.9
(2.2)
P 		83.6
(3)
P 		50
avr 81
(3) 		69.6
(0.2) 		57.3
(-2.8) 		56.4
(-3) 		66.5
(-0.5) 		73.1
(1.1) 		25
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 21.9
(3)
P 		20.3
(2.4)
P 		21
(2.6)
P 		7.1
(-3)
A 		15
B 23.1
(3)
P 		22.1
(2.2)
P 		21.8
(2)
P 		15.6
(-3)
P 		8
C 32.3
(3)
P 		19.4
(-1)
P 		12.8
(-3)
A 		21.5
(-0.3)
P 		20
avr 25.8
(3) 		20.6
(0.2) 		18.5
(-0.9) 		14.7
(-3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 18.2
(-0.1)
A 		26.7
(3)
P 		10.3
(-3)
A 		12.4
(-2.2)
A 		24.4
(2.2)
A 		11.7
(-2.5)
A 		16
B 26.1
(0.7)
P 		23.4
(-0.2)
P 		15.4
(-3)
P 		22.9
(-0.4)
P 		17
(-2.4)
P 		32.7
(3)
P 		17
C 25.6
(2.3)
P 		19.3
(0.5)
A 		15.6
(-0.5)
A 		6.9
(-3)
A 		24.9
(2.1)
P 		28
(3)
P 		21
avr 23.3
(2.5) 		23.1
(2.4) 		13.8
(-3) 		14.1
(-2.8) 		22.1
(1.8) 		24.1
(3) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181144_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7846
Sequence Type Exemplar sequence
Representative Public ID Y79H2A.4 NCBI
Target Description Y79H2A.4 /REP_DB=WormBase Gene ID /WP=CE23093 /TR=Q9U1S1 /GB=CAB54506.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067168(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067168 NCBI Caenorhabditis elegans Y79H2A.4 (Y79H2A.4) mRNA, complete cds. 11/11 None
SNAP00000018008 ENSEMBL cdna:SNAP chromosome:CEL140:III:12030083:12041967:1 9/11 None
GENEFINDER00000018017 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:12041175:12041967:1 11/11 None
Y79H2A.4 ENSEMBL cdna:known chromosome:CEL140:III:12041175:12041967:1 gene:Y79H2A.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:12041170-12041963(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y79H2A.4
Entrez Gene 190740 Entrez gene
SwissProt Q9U1S1 EMBL-EBI
WormBase CE23093 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB54506 Hypothetical protein Y79H2A.4 [Caenorhabditis elegans] ref|NP_499569.1| Y79H2A.4 [Caenorhabditis elegans] 1.0E-106
blast CAB54506 Hypothetical protein Y79H2A.4 [Caenorhabditis elegans] ref|NP_499569.1| Y79H2A.4 [Caenorhabditis elegans] 6.0E-75
blast AAK68334 Hypothetical protein F16B4.6 [Caenorhabditis elegans] ref|NP_503448.1| F16B4.6 [Caenorhabditis elegans] 1.0E-37
blast AAK68334 Hypothetical protein F16B4.6 [Caenorhabditis elegans] ref|NP_503448.1| F16B4.6 [Caenorhabditis elegans] 2.0E-28
Sequence
Target Sequence 
>C. ELEGANS:181144_AT
ggcaaaggtcagcaagtgcgctccaataatccaggaggtcgtgggtctcgccacgaaaac
gttctcacccacttttcgccaatttttcatagttttctatcattctgtcttctgtttcgc
tctaaaatggacgctgccgaaaaaatgaatacagccaccgaacaactgaaacgatcgttt
ttcaccgataactgggagaatgtcgaccaacttcggacaggtttatccgaaatgactgtg
agactcgaggagtgtggccaaactaaaaaggaacgtgatgctctttctaaagctgttaaa
cgagcaggcgctgttcaatacatgtttaacattgggaattggaagctagatgagaagccg
tgcatcttggttggcaatattccatctgctctcacgagctcagaaatgatgggtcatttc
ggtggtcttaaaggattcactggaattttgtttaaaggagaggatacttctctctccaaa
actgtgagaatcctcttcgatgaaagctcatccgctgaagctgccgccaaagacattgat
g

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCAAAGGTCAGCAAGTGCGCTCCA 240 535 19 Antisense
TAATCCAGGAGGTCGTGGGTCTCGC 358 635 45 Antisense
GGGAGAATGTCGACCAACTTCGGAC 520 495 212 Antisense
GGAACGTGATGCTCTTTCTAAAGCT 32 531 288 Antisense
GAAGCCGTGCATCTTGGTTGGCAAT 33 345 372 Antisense
GGTTGGCAATATTCCATCTGCTCTC 132 509 387 Antisense
TCCATCTGCTCTCACGAGCTCAGAA 471 589 399 Antisense
ATGATGGGTCATTTCGGTGGTCTTA 209 47 424 Antisense
AGAGGATACTTCTCTCTCCAAAACT 359 67 477 Antisense
TGAAAGCTCATCCGCTGAAGCTGCC 208 573 519 Antisense
GAAGCTGCCGCCAAAGACATTGATG 390 343 535 Antisense
Sequence Source Affymetrix Proprietary Database