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[181143_at]

Description T23E7.3 /REP_DB=WormBase Gene ID /WP=CE14068 /TR=O17340 /GB=AAB71259.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 44      6grp_total > 0      4grp_total > 03      6grp_total_sub > Hat      6grp_high1_sub > 02      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 299
1 2 3 4 range
A 112.6
(-1.4)
P 		71
(-3)
A 		78.6
(-2.7)
A 		227
(3)
P 		156
B 100.7
(-1.9)
P 		77.5
(-2.6)
A 		65.2
(-3)
P 		252
(3)
P 		187
C 118.8
(-1.6)
P 		102.4
(-1.9)
A 		47.3
(-3)
M 		346.1
(3)
P 		299
avr 110.7
(-1.7) 		83.6
(-2.4) 		63.7
(-3) 		275
(3) 		211

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 168
1 2 3 4 5 6 range
A 84
(-3)
A 		126.7
(0.1)
P 		125.8
(0)
P 		95.7
(-2.2)
P 		124.2
(-0.1)
P 		167.2
(3)
P 		83
B 101.6
(-1.3)
P 		147.5
(3)
P 		91.9
(-2.2)
P 		82.9
(-3)
P 		91.8
(-2.2)
P 		111.8
(-0.3)
P 		65
C 58.4
(-3)
A 		226.5
(3)
P 		89.2
(-1.9)
P 		137.2
(-0.2)
P 		86.3
(-2)
P 		140.4
(-0.1)
P 		168
avr 81.3
(-3) 		166.9
(3) 		102.3
(-1.5) 		105.3
(-1.3) 		100.8
(-1.6) 		139.8
(1.1) 		86
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 43
1 2 3 4 range
A 41
(3)
P 		15.4
(-3)
A 		20.6
(-1.8)
A 		33.2
(1.2)
P 		26
B 32.1
(-0.4)
P 		19.1
(-2.4)
A 		15.1
(-3)
P 		53.7
(3)
P 		39
C 39.3
(0.3)
P 		29.4
(-1.2)
A 		16.5
(-3)
M 		58.4
(3)
P 		42
avr 37.5
(0.9) 		21.3
(-2.2) 		17.4
(-3) 		48.4
(3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 15.5
(-3)
A 		45.1
(3)
P 		27.4
(-0.6)
P 		24.3
(-1.2)
P 		37.5
(1.5)
P 		40.7
(2.1)
P 		30
B 35.4
(-0)
P 		49.1
(3)
P 		22.3
(-2.9)
P 		21.9
(-3)
P 		37.3
(0.4)
P 		41.7
(1.4)
P 		27
C 21.6
(-3)
A 		69.1
(3)
P 		22.7
(-2.9)
P 		27.6
(-2.2)
P 		27.9
(-2.2)
P 		47
(0.2)
P 		48
avr 24.2
(-3) 		54.4
(3) 		24.1
(-3) 		24.6
(-2.9) 		34.2
(-1) 		43.1
(0.8) 		30
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181143_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17563
Sequence Type Exemplar sequence
Representative Public ID T23E7.3 NCBI
Target Description T23E7.3 /REP_DB=WormBase Gene ID /WP=CE14068 /TR=O17340 /GB=AAB71259.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078450(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078450 NCBI Caenorhabditis elegans T23E7.3 (T23E7.3) mRNA, complete cds. 11/11 None
T23E7.3 ENSEMBL cdna:known chromosome:CEL140:X:17665045:17665851:1 gene:T23E7.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000024764 4/11 Cross Hyb Matching Probes None
GENEFINDER00000010644 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:17665043-17665840(+) 14.72 98.31
Public Domain and Genome References
Gene Title
Ensembl T23E7.3
Entrez Gene 188797 Entrez gene
SwissProt O17340 EMBL-EBI
WormBase CE14068 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6278 RNA-dependent DNA replication inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3723 RNA binding inferred from electronic annotation QuickGO AmiGO
3964 RNA-directed DNA polymerase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB71259 Hypothetical protein T23E7.3 [Caenorhabditis elegans] ref|NP_510851.1| T23E7.3 [Caenorhabditis elegans] 5.0E-97
blast T29868 hypothetical protein F10G2.8 - Caenorhabditis elegans 2.0E-42
blast NP_494684 F53C3.9 [Caenorhabditis elegans] 8.0E-36
Sequence
Target Sequence 
>C. ELEGANS:181143_AT
aatcggctaattcggctaactcggctaatattacttatgtactccctataatcgaatatt
gctcagtcgtctactctccctctcctaactctaaactctctgctcatcttgaaaaacctc
ttagatcattctctcgacaagtattacaaagatgcaatatctcattttcttcttatgaaa
accgtcttctaattcttaatatctactcgattcgtcatcgaaggcttaaggcaaagcttc
tacttctttataaattcataagcggtacctcttacttcccaaatctaaacgatctgatca
gaataaccgagtctaaaagaaggcctatgattattatatgtacaaaaccaaaaattactg
attttttcacctcaaccgtccccgtctggaatgttatttttcataatactccccatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATCGGCTAATTCGGCTAACTCGGC 647 169 131 Antisense
CGAATATTGCTCAGTCGTCTACTCT 49 253 183 Antisense
TCTAAACTCTCTGCTCATCTTGAAA 232 613 220 Antisense
AAACCTCTTAGATCATTCTCTCGAC 86 127 244 Antisense
AACCGTCTTCTAATTCTTAATATCT 670 145 310 Antisense
CTTAATATCTACTCGATTCGTCATC 260 13 325 Antisense
AAGGCAAAGCTTCTACTTCTTTATA 489 161 358 Antisense
TTCATAAGCGGTACCTCTTACTTCC 571 685 385 Antisense
TCTTACTTCCCAAATCTAAACGATC 678 613 400 Antisense
TTACTGATTTTTTCACCTCAACCGT 552 683 485 Antisense
GTTATTTTTCATAATACTCCCCATT 522 447 523 Antisense
Sequence Source Affymetrix Proprietary Database