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[181142_at]

Description B0034.1 /REP_DB=WormBase Gene ID /WP=CE02409 /TR=Q10910 /GB=AAK31383.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 19      6grp_high1_10_10 > 91      6grp_highest_nonorm > 71      6grp_total > 92      4grp_total > 60      6grp_highest_sub > 05      6grp_high1_sub > 05      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 366
1 2 3 4 range
A 388.3
(3)
P 		339.6
(2.2)
P 		302.1
(1.5)
P 		32.2
(-3)
A 		356
B 250.3
(0.5)
P 		344.6
(3)
P 		290.8
(1.6)
P 		115.7
(-3)
A 		229
C 288
(1.8)
P 		260.2
(1.3)
P 		354.6
(3)
P 		22.5
(-3)
A 		332
avr 308.9
(2.8) 		314.8
(3) 		315.8
(3) 		56.8
(-3) 		259

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 332
1 2 3 4 5 6 range
A 319
(-0.8)
P 		341.2
(-0.2)
P 		239.2
(-3)
P 		272
(-2.1)
P 		456.8
(3)
P 		262.8
(-2.3)
P 		218
B 292.3
(-1.4)
P 		247.1
(-2.4)
P 		235.2
(-2.6)
P 		301.5
(-1.2)
P 		494.9
(3)
P 		218.1
(-3)
P 		277
C 375.9
(0.4)
P 		292.7
(-1.1)
P 		343.3
(-0.1)
P 		376.2
(0.4)
P 		517.4
(3)
P 		185.3
(-3)
P 		332
avr 329.1
(-0.6) 		293.7
(-1.4) 		272.6
(-1.9) 		316.6
(-0.9) 		489.7
(3) 		222.1
(-3) 		268
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 138
1 2 3 4 range
A 141.4
(3)
P 		73.7
(0)
P 		79
(0.3)
P 		4.7
(-3)
A 		137
B 79.8
(2.5)
P 		85.1
(3)
P 		67.4
(1.2)
P 		24.7
(-3)
A 		60
C 95.3
(1.6)
P 		74.8
(0.6)
P 		123.6
(3)
P 		3.8
(-3)
A 		120
avr 105.5
(3) 		77.9
(1.2) 		90
(2) 		11.1
(-3) 		94

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 149
1 2 3 4 5 6 range
A 58.8
(-2.5)
P 		121.4
(1.9)
P 		52.1
(-3)
P 		69
(-1.8)
P 		137.8
(3)
P 		64
(-2.2)
P 		86
B 101.7
(-1.1)
P 		82.2
(-2)
P 		57.1
(-3)
P 		79.9
(-2.1)
P 		201.1
(3)
P 		81.3
(-2)
P 		144
C 139.3
(1.4)
P 		89.3
(-1.4)
P 		87.4
(-1.6)
P 		75.7
(-2.2)
P 		167.4
(3)
P 		62
(-3)
P 		105
avr 99.9
(-1) 		97.6
(-1.1) 		65.5
(-3) 		74.9
(-2.5) 		168.8
(3) 		69.1
(-2.8) 		103
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181142_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5988
Sequence Type Exemplar sequence
Representative Public ID B0034.1 NCBI
Target Description B0034.1 /REP_DB=WormBase Gene ID /WP=CE02409 /TR=Q10910 /GB=AAK31383.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062791(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062791 NCBI Caenorhabditis elegans B0034.1 (B0034.1) mRNA, complete cds. 11/11 None
SNAP00000014839 ENSEMBL cdna:SNAP chromosome:CEL140:II:5970990:5972423:1 11/11 None
GENEFINDER00000014841 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:5970071:5972423:1 11/11 None
B0034.1 ENSEMBL cdna:known chromosome:CEL140:II:5970996:5972423:1 gene:B0034.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5970992-5972420(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl B0034.1
Entrez Gene 181817 Entrez gene
SwissProt Q10910 EMBL-EBI
WormBase CE02409 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK31383 Hypothetical protein B0034.1 [Caenorhabditis elegans] ref|NP_495192.1| B0034.1 [Caenorhabditis elegans] 2.0E-93
blast AAK31383 Hypothetical protein B0034.1 [Caenorhabditis elegans] ref|NP_495192.1| B0034.1 [Caenorhabditis elegans] 3.0E-93
blast CAE59229 Hypothetical protein CBG02550 [Caenorhabditis briggsae] 2.0E-70
Sequence
Target Sequence 
>C. ELEGANS:181142_AT
gagctcttgtcggcggacaacgtgttggagttgatgggggaattggtggaggacgtgaag
gtgttgaaatgggaagtcaggtgcaatttggaaatgagccaaatcctggtcatccagccg
gacagtttggaagttttatggataatgtcaaaaactttttctcatttttgggtcgtggaa
tgccaatgccccctcaacaaccacctccatcacctccattctcattgggagtcactcgtc
caccaactttaattggtactgaaagatctgaaagtgaaaatggaggaagacatagacctc
gcccatggttcccagaaggtgaacaaattccagaagtaactggagaaatgaggccaaaag
aaggagaagctggaatttcttcatcatcctcttcctcttctgaaactgaattcattgggc
caaacaatggagaaatccccagaaaatctgtcgagttcagtatcgataaagagccaagag
aggagttcactgaggatttattcacggcacaaacaagtcgaccacga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGCTCTTGTCGGCGGACAACGTGT 413 387 107 Antisense
AATGAGCCAAATCCTGGTCATCCAG 112 165 199 Antisense
GGTCATCCAGCCGGACAGTTTGGAA 638 503 214 Antisense
TTGGGTCGTGGAATGCCAATGCCCC 232 707 274 Antisense
CATTCTCATTGGGAGTCACTCGTCC 539 215 323 Antisense
TCACTCGTCCACCAACTTTAATTGG 682 625 338 Antisense
GAGGAAGACATAGACCTCGCCCATG 328 405 389 Antisense
TCGCCCATGGTTCCCAGAAGGTGAA 633 597 405 Antisense
AGCTGGAATTTCTTCATCATCCTCT 529 81 474 Antisense
TCCTCTTCCTCTTCTGAAACTGAAT 388 593 493 Antisense
CACGGCACAAACAAGTCGACCACGA 537 197 609 Antisense
Sequence Source Affymetrix Proprietary Database