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[181141_at]

Description T02H6.6 /REP_DB=WormBase Gene ID /WP=CE21142 /TR=Q9N5E8 /GB=AAF39965.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 58      4grp_total > 18      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 8.2
(0.5)
A 		11.4
(2.9)
A 		3.4
(-3)
A 		11.6
(3)
A 		8
B 4.2
(-2.9)
A 		21.3
(3)
A 		3.9
(-3)
A 		18.1
(1.9)
A 		17
C 5
(-2.4)
A 		2.2
(-3)
A 		14.6
(-0.5)
A 		31.5
(3)
A 		29
avr 5.8
(-3) 		11.6
(-0.6) 		7.3
(-2.4) 		20.4
(3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 25
(1.1)
A 		3.8
(-3)
A 		34.6
(3)
A 		23.7
(0.9)
A 		11
(-1.6)
A 		13.8
(-1.1)
A 		31
B 19.1
(3)
A 		1.8
(-3)
A 		6.4
(-1.4)
A 		9.1
(-0.5)
A 		15
(1.6)
A 		12.9
(0.8)
A 		17
C 11.3
(-1.5)
A 		4.2
(-2.6)
A 		1.2
(-3)
A 		3.7
(-2.6)
A 		1.6
(-2.9)
A 		41.2
(3)
A 		40
avr 18.5
(1.7) 		3.3
(-3) 		14.1
(0.4) 		12.2
(-0.2) 		9.2
(-1.2) 		22.6
(3) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 3
(3)
A 		2.5
(1.6)
A 		0.9
(-3)
A 		1.7
(-0.7)
A 		2
B 1.4
(-2.3)
A 		5.3
(3)
A 		0.9
(-3)
A 		3.9
(1.1)
A 		4
C 1.7
(-1.6)
A 		0.6
(-3)
A 		5.1
(2.7)
A 		5.3
(3)
A 		5
avr 2
(-3) 		2.8
(-0) 		2.3
(-1.9) 		3.6
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 4.6
(0.1)
A 		1.4
(-3)
A 		7.5
(3)
A 		6
(1.5)
A 		3.3
(-1.1)
A 		3.4
(-1)
A 		6
B 6.6
(3)
A 		0.6
(-3)
A 		1.5
(-2.1)
A 		2.4
(-1.2)
A 		6.1
(2.5)
A 		4.8
(1.2)
A 		6
C 4.2
(-1.3)
A 		1.3
(-2.6)
A 		0.3
(-3)
A 		0.7
(-2.8)
A 		0.5
(-2.9)
A 		13.8
(3)
A 		14
avr 5.1
(0.9) 		1.1
(-3) 		3.1
(-1.1) 		3
(-1.2) 		3.3
(-0.9) 		7.3
(3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181141_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4459
Sequence Type Exemplar sequence
Representative Public ID T02H6.6 NCBI
Target Description T02H6.6 /REP_DB=WormBase Gene ID /WP=CE21142 /TR=Q9N5E8 /GB=AAF39965.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061390
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000003377 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:679031:684122:1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_061390 4/11 Cross Hyb Matching Probes None
T02H6.6 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:683649-684122(+) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF39967 Hypothetical protein T02H6.9 [Caenorhabditis elegans] ref|NP_493787.1| T02H6.9 [Caenorhabditis elegans] 1.0E-103
blast AAF39966 Hypothetical protein T02H6.7 [Caenorhabditis elegans] ref|NP_493790.1| T02H6.7 [Caenorhabditis elegans] 3.0E-85
blast AAF39961 Hypothetical protein T02H6.4 [Caenorhabditis elegans] ref|NP_493793.1| T02H6.4 [Caenorhabditis elegans] 2.0E-71
Protein Domains
Database ID Description E-Value
Pfam IPR005515 EMBL-EBI Vitelline membrane outer layer protein I (VOMI) 7.0E-110
Pfam IPR005515 EMBL-EBI Vitelline membrane outer layer protein I (VOMI) 8.2E-25
Sequence
Target Sequence 
>C. ELEGANS:181141_AT
gaagtgcgcggcaattgccattcggcaacaactgccgaaattcccgacaactgccgaaat
tccaaaggtgcttttttgcatctgggtttcgtgcgcattggcgtttatggccccatcgtt
tctgggcatgatactctacgtcagtcccctggtctctccacagctcaccttttcatcaca
atttgcagttttacgcgctggatatttaaagaaatcacttcagaaaattacgattattac
acaaccaacggccaatacacgaacca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGTGCGCGGCAATTGCCATTCGG 302 335 30 Antisense
GGCAACAACTGCCGAAATTCCCGAC 363 533 53 Antisense
ACTGCCGAAATTCCAAAGGTGCTTT 188 87 79 Antisense
AGGTGCTTTTTTGCATCTGGGTTTC 428 53 95 Antisense
TTTTGCATCTGGGTTTCGTGCGCAT 588 677 103 Antisense
TCGTGCGCATTGGCGTTTATGGCCC 156 605 118 Antisense
TTATGGCCCCATCGTTTCTGGGCAT 530 681 134 Antisense
TGGGCATGATACTCTACGTCAGTCC 619 553 152 Antisense
CAATTTGCAGTTTTACGCGCTGGAT 581 179 208 Antisense
ACGATTATTACACAACCAACGGCCA 461 1 259 Antisense
CAACCAACGGCCAATACACGAACCA 129 187 271 Antisense
Sequence Source Affymetrix Proprietary Database