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[181140_at]

Description T19D2.3 /REP_DB=WormBase Gene ID /WP=CE07516 /TR=Q22581 /GB=AAA83601.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 60      6grp_high1_10_10 > 37      4grp_highest_8_8 > 31      4grp_high_8_8 > 13      6grp_highest_nonorm > 80      6grp_total > 17      4grp_total > 11      6grp_highest_sub > De      6grp_total_sub > Decrease      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 412
1 2 3 4 range
A 214
(-2.1)
P 		205.7
(-2.3)
P 		162.3
(-3)
P 		518
(3)
P 		356
B 169.4
(-2.2)
P 		196.6
(-1.8)
P 		114.3
(-3)
P 		526.4
(3)
P 		412
C 280.7
(-1.7)
P 		230.1
(-2.8)
P 		221.1
(-3)
P 		492.5
(3)
P 		271
avr 221.4
(-2) 		210.8
(-2.2) 		165.9
(-3) 		512.3
(3) 		346

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 184
1 2 3 4 5 6 range
A 257.1
(3)
P 		215.8
(-0)
P 		211.5
(-0.3)
P 		174.7
(-3)
P 		187.6
(-2.1)
P 		217.9
(0.1)
P 		82
B 262.3
(3)
P 		167.9
(-3)
P 		217.4
(0.1)
P 		170
(-2.9)
P 		192.9
(-1.4)
P 		175.4
(-2.5)
P 		94
C 335.4
(3)
P 		229.1
(-0.5)
P 		233.5
(-0.3)
P 		176.9
(-2.2)
P 		151.3
(-3)
P 		184.6
(-1.9)
P 		184
avr 284.9
(3) 		204.3
(-1.4) 		220.8
(-0.5) 		173.9
(-3) 		177.3
(-2.8) 		192.6
(-2) 		111
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 86
1 2 3 4 range
A 77.9
(3)
P 		44.6
(-2.6)
P 		42.4
(-3)
P 		75.8
(2.6)
P 		36
B 54
(-1.1)
P 		48.6
(-1.5)
P 		26.5
(-3)
P 		112.2
(3)
P 		86
C 92.9
(3)
P 		66.2
(-3)
P 		77.1
(-0.6)
P 		83
(0.8)
P 		27
avr 74.9
(0.8) 		53.1
(-2.4) 		48.7
(-3) 		90.3
(3) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 89
1 2 3 4 5 6 range
A 47.4
(-2.4)
P 		76.7
(3)
P 		46.1
(-2.7)
P 		44.3
(-3)
P 		56.6
(-0.7)
P 		53.1
(-1.4)
P 		32
B 91.3
(3)
P 		55.9
(-1.6)
P 		52.8
(-2)
P 		45
(-3)
P 		78.4
(1.3)
P 		65.4
(-0.4)
P 		46
C 124.3
(3)
P 		69.9
(-0.7)
P 		59.4
(-1.4)
P 		35.6
(-3)
P 		49
(-2.1)
P 		61.8
(-1.2)
P 		89
avr 87.7
(3) 		67.5
(0.4) 		52.8
(-1.5) 		41.6
(-3) 		61.3
(-0.4) 		60.1
(-0.6) 		46
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181140_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18119
Sequence Type Exemplar sequence
Representative Public ID T19D2.3 NCBI
Target Description T19D2.3 /REP_DB=WormBase Gene ID /WP=CE07516 /TR=Q22581 /GB=AAA83601.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076281(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076281 NCBI Caenorhabditis elegans T19D2.3 (T19D2.3) mRNA, complete cds. 11/11 None
GENEFINDER00000037617 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:3931748:3940070:1 9/11 None
SNAP00000037613 ENSEMBL cdna:SNAP chromosome:CEL140:X:3939744:3940070:1 9/11 None
T19D2.3 ENSEMBL cdna:known chromosome:CEL140:X:3939379:3940070:1 gene:T19D2.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:3939379-3940071(+) 81.04 100.0
Public Domain and Genome References
Gene Title
Ensembl T19D2.3
Entrez Gene 180676 Entrez gene
SwissProt Q22581 EMBL-EBI
WormBase CE07516 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA83600 Hypothetical protein T19D2.1 [Caenorhabditis elegans] ref|NP_508681.2| T19D2.1 [Caenorhabditis elegans] 0.0
blast CAE68502 Hypothetical protein CBG14312 [Caenorhabditis briggsae] 0.0
blast CAE57226 Hypothetical protein CBG00091 [Caenorhabditis briggsae] 1.0E-136
blast AAA83601 Hypothetical protein T19D2.3 [Caenorhabditis elegans] ref|NP_508682.1| T19D2.3 [Caenorhabditis elegans] 8.0E-23
blast CAE68503 Hypothetical protein CBG14313 [Caenorhabditis briggsae] 3.0E-14
blast AAA83601 Hypothetical protein T19D2.3 [Caenorhabditis elegans] ref|NP_508682.1| T19D2.3 [Caenorhabditis elegans] 8.0E-11
Protein Domains
Database ID Description E-Value
Pfam IPR001590 EMBL-EBI Peptidase M12B, ADAM/reprolysin 2.5E-9
Pfam IPR000884 EMBL-EBI Thrombospondin, type I 4.6E-9
Pfam IPR000884 EMBL-EBI Thrombospondin, type I 1.4E-10
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508682.1 1 29-51
T19D2.3 1 29-51
GENEFINDER00000037617 1 906-928
SNAP00000037613 1 15-37
Sequence
Target Sequence 
>C. ELEGANS:181140_AT
tggggaagtggccgtcaagttccgatcaaaatgaccaaaatccagatggaatcatgacat
ctacttttggtagagacgtggagtcggttgctttcgcggttttattatttttggcagctg
gaattgtactttttatctcctgtttctttgtcaccaaatgcttacaatgctacaaagccc
gacagcggcgactacgacgaaaagctctcggcgaagacgacgacgacgatgatgatgatg
atgatgttgataatgatgtggatattgatgaggatgagccacaaactacaatcaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGGGAAGTGGCCGTCAAGTTCCGA 120 551 14 Antisense
TGGCCGTCAAGTTCCGATCAAAATG 78 543 22 Antisense
AGAGACGTGGAGTCGGTTGCTTTCG 283 67 85 Antisense
TCGGTTGCTTTCGCGGTTTTATTAT 186 601 97 Antisense
GAATTGTACTTTTTATCTCCTGTTT 603 323 134 Antisense
TCTCCTGTTTCTTTGTCACCAAATG 331 611 149 Antisense
ATGCTTACAATGCTACAAAGCCCGA 520 41 171 Antisense
TACAAAGCCCGACAGCGGCGACTAC 590 641 184 Antisense
GCGGCGACTACGACGAAAAGCTCTC 198 293 198 Antisense
GACGAAAAGCTCTCGGCGAAGACGA 658 373 209 Antisense
GGATGAGCCACAAACTACAATCACA 475 513 285 Antisense
Sequence Source Affymetrix Proprietary Database