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[181139_at]

Description F13G11.2 /REP_DB=WormBase Gene ID /WP=CE19790 /TR=Q9XU44 /GB=CAB05897.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 98      4grp_total > 02      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 132
1 2 3 4 range
A 45.7
(-2.9)
A 		54.8
(-2.4)
A 		43.1
(-3)
A 		152.9
(3)
A 		110
B 52.3
(-1.8)
P 		42.3
(-3)
A 		75.3
(1.1)
P 		90.3
(3)
A 		48
C 27.1
(-2.5)
A 		38
(-1.6)
A 		20.5
(-3)
A 		96.4
(3)
A 		76
avr 41.7
(-3) 		45
(-2.7) 		46.3
(-2.6) 		113.2
(3) 		72

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 231
1 2 3 4 5 6 range
A 5.3
(-3)
A 		23.8
(-2.5)
A 		41
(-2)
A 		44.8
(-1.9)
A 		164.1
(1.6)
P 		214.3
(3)
P 		209
B 3.7
(-3)
A 		45
(-1.5)
A 		45.4
(-1.5)
A 		20.4
(-2.4)
A 		151.5
(2.2)
P 		173.6
(3)
P 		170
C 7.9
(-3)
A 		36.4
(-2.2)
A 		53.4
(-1.8)
A 		62.2
(-1.6)
A 		133.3
(0.3)
P 		234.2
(3)
P 		226
avr 5.6
(-3) 		35.1
(-2.1) 		46.6
(-1.8) 		42.5
(-1.9) 		149.6
(1.3) 		207.4
(3) 		202
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 16.6
(-0.1)
A 		11.9
(-2.7)
A 		11.3
(-3)
A 		22.4
(3)
A 		11
B 16.7
(1.3)
P 		10.4
(-3)
A 		17.4
(1.8)
P 		19.2
(3)
A 		9
C 9
(-1.8)
A 		10.9
(-0.6)
A 		7.2
(-3)
A 		16.3
(3)
A 		9
avr 14.1
(-0.8) 		11.1
(-3) 		12
(-2.3) 		19.3
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 77
1 2 3 4 5 6 range
A 1
(-3)
A 		8.4
(-2.1)
A 		8.9
(-2.1)
A 		11.4
(-1.8)
A 		49.5
(2.7)
P 		52.2
(3)
P 		51
B 1.3
(-3)
A 		15
(-1.7)
A 		11
(-2.1)
A 		5.4
(-2.6)
A 		61.5
(2.7)
P 		64.7
(3)
P 		63
C 2.9
(-3)
A 		11.1
(-2.3)
A 		13.6
(-2.1)
A 		12.5
(-2.2)
A 		43.1
(0.2)
P 		78.4
(3)
P 		76
avr 1.7
(-3) 		11.5
(-2.1) 		11.2
(-2.1) 		9.8
(-2.2) 		51.4
(1.7) 		65.1
(3) 		63
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181139_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8796
Sequence Type Exemplar sequence
Representative Public ID F13G11.2 NCBI
Target Description F13G11.2 /REP_DB=WormBase Gene ID /WP=CE19790 /TR=Q9XU44 /GB=CAB05897.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070371(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070371 NCBI Caenorhabditis elegans F13G11.2 (F13G11.2) mRNA, complete cds. 11/11 None
GENEFINDER00000040045 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:14633134:14634335:1 11/11 None
F13G11.2 ENSEMBL cdna:known chromosome:CEL140:IV:14633091:14634335:1 gene:F13G11.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001028348 7/11 Cross Hyb Matching Probes None
SNAP00000021641 7/11 Cross Hyb Matching Probes None
GENEFINDER00000021646 7/11 Cross Hyb Matching Probes None
SNAP00000040043 8/11 Cross Hyb Matching Probes None
Y57G11B.7 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:14633147-14634341(+) 99.69 99.69
chrIV:14579246-14580937(-) 93.88 93.88
Public Domain and Genome References
Gene Title
Ensembl F13G11.2
Entrez Gene 184432 Entrez gene
SwissProt Q9XU44 EMBL-EBI
WormBase CE19790 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05897 Hypothetical protein F13G11.2 [Caenorhabditis elegans] ref|NP_502772.1| F13G11.2 [Caenorhabditis elegans] 1.0E-117
blast CAE18018 Hypothetical protein Y57G11B.7 [Caenorhabditis elegans] ref|NP_001023519.1| Y57G11B.7 [Caenorhabditis elegans] 1.0E-110
blast CAE73941 Hypothetical protein CBG21564 [Caenorhabditis briggsae] 3.0E-62
blast CAE73941 Hypothetical protein CBG21564 [Caenorhabditis briggsae] 4.0E-62
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502772.1 1 180-202
F13G11.2 1 180-202
GENEFINDER00000040045 1 179-201
Sequence
Target Sequence 
>C. ELEGANS:181139_AT
gaaccaattccactgcaacattaaaaatttgaaacgtgacgctcagaactacctcgagtg
gcctaactggtgtcaagtgtttcatggaaatttgcatttgagagtgattaatttgaaagc
tgcaaattttgagaaattgcgtgaaatccgtggaaccctttcactaatcaattctccatt
caatcgaatgcctcaaatgccaaatcttgtcagtattaaaactcataattcattccctgg
actcgttattctcaacaatacaagactccgtgatatgcgtggatttgtggattggaataa
ggatgtcaagattacgggaaatgaatttccagtttttatttctggaaatctggaattgga
tactgttaacctgccagaaatgttccacaaaccatattctccactttcgtgtgaaaagag
attgatgccaaattataatattcaatttgcagaaggaatgtcgcttgctgccgtcctatt
cacattgatcatctgtgctacaatgttccttcatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACCAATTCCACTGCAACATTAAA 502 345 96 Antisense
GAAACGTGACGCTCAGAACTACCTC 91 357 126 Antisense
TACCTCGAGTGGCCTAACTGGTGTC 24 651 145 Antisense
ATCCGTGGAACCCTTTCACTAATCA 105 39 241 Antisense
CACTAATCAATTCTCCATTCAATCG 183 197 257 Antisense
AACTCATAATTCATTCCCTGGACTC 129 139 315 Antisense
TCCCTGGACTCGTTATTCTCAACAA 583 597 329 Antisense
AACCATATTCTCCACTTTCGTGTGA 222 147 485 Antisense
CAGAAGGAATGTCGCTTGCTGCCGT 521 201 545 Antisense
TGCCGTCCTATTCACATTGATCATC 92 585 564 Antisense
ATCTGTGCTACAATGTTCCTTCATC 93 35 586 Antisense
Sequence Source Affymetrix Proprietary Database