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[181137_at]

Description F46G10.1 /REP_DB=WormBase Gene ID /WP=CE02237 /TR=Q20476 /GB=CAA90542.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 25      6grp_high1_10_10 > 41      4grp_highest_8_8 > 11      4grp_high_8_8 > 55      6grp_highest_nonorm > 34      6grp_total > 52      4grp_total > 48      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1941
1 2 3 4 range
A 1662.1
(-3)
P 		2579.5
(1.2)
P 		2976
(3)
P 		1826.8
(-2.2)
P 		1314
B 1877.8
(-2.8)
P 		2673.1
(-0.1)
P 		3602.7
(3)
P 		1829.6
(-3)
P 		1773
C 1701.6
(-3)
P 		2535.5
(0)
P 		3355.3
(3)
P 		1837.9
(-2.5)
P 		1654
avr 1747.2
(-3) 		2596
(0.3) 		3311.3
(3) 		1831.4
(-2.7) 		1564

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3270
1 2 3 4 5 6 range
A 1722.1
(-1.9)
P 		2197.7
(-0.8)
P 		3879
(3)
P 		2892.6
(0.8)
P 		1810
(-1.7)
P 		1245.2
(-3)
P 		2634
B 2265.1
(-2.4)
P 		3286.6
(0.1)
P 		4515.3
(3)
P 		2740.9
(-1.3)
P 		2479.4
(-1.9)
P 		2015.2
(-3)
P 		2500
C 2121.9
(-1.3)
P 		3153.2
(3)
P 		3073.2
(2.7)
P 		2536.1
(0.4)
P 		1717.7
(-3)
P 		1873.2
(-2.4)
P 		1436
avr 2036.4
(-2.1) 		2879.2
(0.3) 		3822.5
(3) 		2723.2
(-0.1) 		2002.4
(-2.2) 		1711.2
(-3) 		2111
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 902
1 2 3 4 range
A 605.2
(1)
P 		559.9
(0.4)
P 		778
(3)
P 		267.4
(-3)
P 		511
B 598.8
(-0.2)
P 		660.2
(0.6)
P 		834.8
(3)
P 		389.9
(-3)
P 		445
C 563.3
(-1.2)
P 		729
(-0.1)
P 		1169.4
(3)
P 		309.9
(-3)
P 		860
avr 589.1
(-0.4) 		649.7
(0.2) 		927.4
(3) 		322.4
(-3) 		605

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 793
1 2 3 4 5 6 range
A 317.5
(-2.8)
P 		781.6
(2.3)
P 		844.8
(3)
P 		733.6
(1.8)
P 		546.2
(-0.3)
P 		303.2
(-3)
P 		542
B 788.1
(-2)
P 		1094
(3)
P 		1096.5
(3)
P 		726
(-3)
P 		1007.4
(1.6)
P 		751.5
(-2.6)
P 		371
C 786.5
(0.7)
P 		962.1
(3)
P 		782.2
(0.6)
P 		510
(-3)
P 		555.8
(-2.4)
P 		627.1
(-1.4)
P 		452
avr 630.7
(-1.9) 		945.9
(3) 		907.8
(2.4) 		656.5
(-1.5) 		703.1
(-0.8) 		560.6
(-3) 		385
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181137_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17519
Sequence Type Exemplar sequence
Representative Public ID F46G10.1 NCBI
Target Description F46G10.1 /REP_DB=WormBase Gene ID /WP=CE02237 /TR=Q20476 /GB=CAA90542.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077816(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077816 NCBI Caenorhabditis elegans F46G10.1 (F46G10.1) mRNA, complete cds. 11/11 None
GENEFINDER00000042669 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:13308876:13311646:-1 10/11 None
SNAP00000042662 ENSEMBL cdna:SNAP chromosome:CEL140:X:13310220:13311646:-1 11/11 None
F46G10.1 ENSEMBL cdna:known chromosome:CEL140:X:13310150:13311693:-1 gene:F46G10.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:13310219-13311607(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F46G10.1
Entrez Gene 185875 Entrez gene
SwissProt Q20476 EMBL-EBI
WormBase CE31520 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6813 potassium ion transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
8076 voltage-gated potassium channel complex inferred from electronic annotation QuickGO AmiGO
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5249 voltage-gated potassium channel activity inferred from electronic annotation QuickGO AmiGO
5515 protein binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA90542 Hypothetical protein F46G10.1 [Caenorhabditis elegans] ref|NP_510217.2| F46G10.1 [Caenorhabditis elegans] 3.0E-89
blast CAA90542 Hypothetical protein F46G10.1 [Caenorhabditis elegans] ref|NP_510217.2| F46G10.1 [Caenorhabditis elegans] 4.0E-89
blast CAE63364 Hypothetical protein CBG07773 [Caenorhabditis briggsae] 3.0E-86
blast CAE63364 Hypothetical protein CBG07773 [Caenorhabditis briggsae] 2.0E-79
blast CAA90542 Hypothetical protein F46G10.1 [Caenorhabditis elegans] ref|NP_510217.2| F46G10.1 [Caenorhabditis elegans] 2.0E-40
blast CAE63364 Hypothetical protein CBG07773 [Caenorhabditis briggsae] 6.0E-35
blast T26019 hypothetical protein VM106R.1 - Caenorhabditis elegans 2.0E-9
Protein Domains
Database ID Description E-Value
Pfam IPR003131 EMBL-EBI K+ channel tetramerisation 1.5E-10
Pfam IPR003131 EMBL-EBI K+ channel tetramerisation 8.6E-7
Pfam IPR003131 EMBL-EBI K+ channel tetramerisation 1.5E-10
Sequence
Target Sequence 
>C. ELEGANS:181137_AT
taccgctgagtatgctgattataaaaagcgtgatgagtcaggagcaatcttcgtgaaccg
ggacgggcgtctgtttgcattcgttctgcaatttatgagagacggaaagaacactgtcct
gccaaaagataaagacgtgttagcacagctcaaacgagaagcagacttctttggcatgga
ggtattcaagtacctaattcaagagacacttgttgacattgaaaaggaacaacgtgccaa
caccaatgatattgtggatattcgcaattcggtgaaccaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACCGCTGAGTATGCTGATTATAAA 270 649 18 Antisense
GTCAGGAGCAATCTTCGTGAACCGG 187 465 54 Antisense
TGAACCGGGACGGGCGTCTGTTTGC 300 569 71 Antisense
GTTTGCATTCGTTCTGCAATTTATG 548 451 90 Antisense
GAGACGGAAAGAACACTGTCCTGCC 485 393 116 Antisense
GAACACTGTCCTGCCAAAAGATAAA 70 353 126 Antisense
GACGTGTTAGCACAGCTCAAACGAG 406 377 151 Antisense
AGCAGACTTCTTTGGCATGGAGGTA 430 77 177 Antisense
TTCAAGTACCTAATTCAAGAGACAC 196 655 202 Antisense
GGAACAACGTGCCAACACCAATGAT 307 529 243 Antisense
GGATATTCGCAATTCGGTGAACCAA 117 511 273 Antisense
Sequence Source Affymetrix Proprietary Database