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[181136_s_at]

Description F52B11.3 /REP_DB=WormBase Gene ID /WP=CE18723 /TR=Q9XUE5 /GB=CAB05199.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 10      6grp_high1_10_10 > 07      4grp_highest_8_8 > 02      4grp_high_8_8 > 46      6grp_highest_nonorm > 03      6grp_total > 04      4grp_total > 49      6grp_cgc > 41      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6182
1 2 3 4 range
A 120
(-3)
P 		5669.4
(2.4)
P 		6301.2
(3)
P 		197.4
(-2.9)
P 		6181
B 145.9
(-3)
P 		5788.7
(3)
P 		5412.1
(2.6)
P 		118.9
(-3)
P 		5670
C 123.9
(-3)
P 		5666.8
(2.7)
P 		6005
(3)
P 		130
(-3)
P 		5881
avr 129.9
(-3) 		5708.3
(2.8) 		5906.1
(3) 		148.8
(-3) 		5776

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4125
1 2 3 4 5 6 range
A 5079.6
(3)
P 		3274.6
(0.3)
P 		2532.8
(-0.8)
P 		3245.1
(0.2)
P 		2561
(-0.8)
P 		1099.7
(-3)
P 		3980
B 5224.6
(3)
P 		3727.9
(0.8)
P 		2295.3
(-1.4)
P 		3642.8
(0.6)
P 		2419.5
(-1.2)
P 		1204.2
(-3)
P 		4020
C 4530.9
(3)
P 		3598
(1.4)
P 		2881.2
(0.1)
P 		3372.3
(1)
P 		2384.2
(-0.8)
P 		1100.9
(-3)
P 		3430
avr 4945
(3) 		3533.5
(0.8) 		2569.8
(-0.7) 		3420.1
(0.6) 		2454.9
(-0.9) 		1134.9
(-3) 		3810
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2071
1 2 3 4 range
A 43.7
(-2.9)
P 		1230.7
(1.5)
P 		1647.3
(3)
P 		28.9
(-3)
P 		1618
B 46.5
(-2.9)
P 		1429.7
(3)
P 		1254.1
(2.2)
P 		25.3
(-3)
P 		1404
C 41
(-2.9)
P 		1629.2
(1.7)
P 		2092.9
(3)
P 		21.9
(-3)
P 		2071
avr 43.7
(-2.9) 		1429.9
(2.1) 		1664.8
(3) 		25.4
(-3) 		1639

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1550
1 2 3 4 5 6 range
A 936.4
(1.5)
P 		1164.6
(3)
P 		551.6
(-1.1)
P 		823
(0.7)
P 		772.8
(0.4)
P 		267.7
(-3)
P 		897
B 1817.9
(3)
P 		1240.9
(0.5)
P 		557.4
(-2.5)
P 		964.8
(-0.7)
P 		983
(-0.7)
P 		449
(-3)
P 		1369
C 1679.4
(3)
P 		1097.9
(0.3)
P 		733.3
(-1.3)
P 		678.2
(-1.6)
P 		771.5
(-1.2)
P 		368.5
(-3)
P 		1311
avr 1477.9
(3) 		1167.8
(1.3) 		614.1
(-1.6) 		822
(-0.5) 		842.4
(-0.4) 		361.7
(-3) 		1116
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 181136_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8768
Sequence Type Exemplar sequence
Representative Public ID F52B11.3 NCBI
Target Description F52B11.3 /REP_DB=WormBase Gene ID /WP=CE18723 /TR=Q9XUE5 /GB=CAB05199.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070298(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070298 NCBI Caenorhabditis elegans F52B11.3 (F52B11.3) mRNA, complete cds. 11/11 None
SNAP00000035581 ENSEMBL cdna:SNAP chromosome:CEL140:IV:14092988:14096270:1 11/11 None
GENEFINDER00000035594 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:14091238:14096030:1 9/11 None
F52B11.3.3 ENSEMBL cdna:known chromosome:CEL140:IV:14091217:14096592:1 gene:F52B11.3 11/11 None
F52B11.3.2 ENSEMBL cdna:known chromosome:CEL140:IV:14091218:14096592:1 gene:F52B11.3 11/11 None
F52B11.3.1 ENSEMBL cdna:known chromosome:CEL140:IV:14091223:14096592:1 gene:F52B11.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000035587 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:14091243-14096276(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol noah-2
Ensembl F52B11.3
Entrez Gene 178365 Entrez gene
SwissProt Q9XUE5 EMBL-EBI
WormBase CE18723 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05199 Hypothetical protein F52B11.3 [Caenorhabditis elegans] ref|NP_502699.1| F52B11.3 [Caenorhabditis elegans] 0.0
blast CAE71775 Hypothetical protein CBG18772 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001507 EMBL-EBI Endoglin/CD105 antigen 1.7E-4
Pfam IPR003014 EMBL-EBI N/apple PAN 1.1E-17
Pfam IPR003014 EMBL-EBI N/apple PAN 1.4E-26
Pfam IPR003014 EMBL-EBI N/apple PAN 9.3E-18
Pfam IPR003014 EMBL-EBI N/apple PAN 7.6E-22
Pfam IPR001507 EMBL-EBI Endoglin/CD105 antigen 1.7E-4
Pfam IPR003014 EMBL-EBI N/apple PAN 2.1E-8
Pfam IPR003014 EMBL-EBI N/apple PAN 1.4E-26
Pfam IPR003014 EMBL-EBI N/apple PAN 9.3E-18
Pfam IPR003014 EMBL-EBI N/apple PAN 7.6E-22
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502699.1 1 705-727
F52B11.3.3 1 705-727
F52B11.3.2 1 705-727
F52B11.3.1 1 705-727
SNAP00000035581 1 661-683
Sequence
Target Sequence 
>C. ELEGANS:181136_S_AT
tccacttctcttggttatcacttccgagcaagctggaccacacaacatgatggtgacaga
gtgcactgctactcgtgtcggaggattcggagatactgttccattcactcttatcgagaa
cggatgcccaaggtacccagctcttgtcggaccagtcgagcaagactttgacaagaaccg
tctgaagtctgatcttcgtgccttccgattggatggatcctacgatgtgcaaattgtgtg
ctcaatcatgttctgtgccggaccaaatggatgcccagtgtcgaactgccttgattcagg
aaccaatgagttgttcatgtcccatggaagaaagaagagatccgctgatttagaagctgg
agagaccgaggagaagctttcggctatcattcgagtattcgcaaagggagaggacgagga
ggagatggagatggctaacaacacaatgatgaccagcatgtccgactccaccgagcttct
ctgcatcgctgagccattcttcgtgagctcagtcgtctcgctctcagtgctctgctttgc
tctttcagccattattgccatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCACTTCTCTTGGTTATCACTTCC 239 589 1626 Antisense
TCACTTCCGAGCAAGCTGGACCACA 411 627 1643 Antisense
GACAGAGTGCACTGCTACTCGTGTC 462 367 1680 Antisense
TCGGAGATACTGTTCCATTCACTCT 281 607 1712 Antisense
CAGCTCTTGTCGGACCAGTCGAGCA 480 203 1763 Antisense
TCTTCGTGCCTTCCGATTGGATGGA 594 617 1818 Antisense
TGTGTGCTCAATCATGTTCTGTGCC 678 555 1860 Antisense
GTGCCGGACCAAATGGATGCCCAGT 215 477 1880 Antisense
GAAGCTTTCGGCTATCATTCGAGTA 668 341 1998 Antisense
TCGCTGAGCCATTCTTCGTGAGCTC 448 595 2111 Antisense
TGCTCTTTCAGCCATTATTGCCATC 544 579 2163 Antisense
Sequence Source Affymetrix Proprietary Database