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[181135_at]

Description R08C7.9 /REP_DB=WormBase Gene ID /WP=CE07432 /TR=Q21842 /GB=AAC48077.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 80      4grp_total > 56      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 62
1 2 3 4 range
A 8.8
(-3)
A 		17.7
(-2.1)
A 		71
(3)
A 		15.7
(-2.3)
A 		62
B 32.7
(-0.2)
A 		57.3
(3)
A 		17.1
(-2.2)
A 		10.9
(-3)
A 		46
C 31.6
(1)
A 		10.7
(-3)
A 		30.9
(0.8)
A 		42.4
(3)
A 		32
avr 24.4
(-2.5) 		28.6
(-1) 		39.7
(3) 		23
(-3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 11.1
(-2.1)
A 		37.1
(1.1)
A 		41.1
(1.6)
A 		51.9
(3)
A 		4.2
(-3)
A 		50.1
(2.8)
A 		48
B 58.4
(3)
P 		51.6
(2)
A 		19.8
(-2.7)
A 		29.4
(-1.3)
A 		53.8
(2.3)
A 		18
(-3)
A 		40
C 12.8
(-2.1)
A 		6.1
(-2.9)
A 		4.8
(-3)
A 		57.5
(3)
A 		24.5
(-0.8)
A 		30.3
(-0.1)
A 		53
avr 27.4
(-1.6) 		31.6
(-0.6) 		21.9
(-3) 		46.3
(3) 		27.5
(-1.6) 		32.8
(-0.3) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 3.2
(-2.7)
A 		3.8
(-2.4)
A 		18.6
(3)
A 		2.3
(-3)
A 		16
B 10.4
(1.1)
A 		14.1
(3)
A 		4
(-2.1)
A 		2.3
(-3)
A 		12
C 10.5
(2.8)
A 		3.1
(-3)
A 		10.8
(3)
A 		7.2
(0.2)
A 		8
avr 8
(0.4) 		7
(-0.4) 		11.1
(3) 		3.9
(-3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 2
(-2.6)
A 		13.2
(3)
A 		8.9
(0.8)
A 		13.2
(3)
A 		1.3
(-3)
A 		12.2
(2.5)
A 		12
B 20.3
(2.4)
P 		17.2
(1.4)
A 		4.8
(-3)
A 		7.8
(-1.9)
A 		21.9
(3)
A 		6.7
(-2.3)
A 		17
C 4.7
(-1)
A 		1.9
(-2.6)
A 		1.2
(-3)
A 		11.6
(3)
A 		7.9
(0.9)
A 		10.1
(2.1)
A 		10
avr 9
(1.1) 		10.8
(2.9) 		5
(-3) 		10.9
(3) 		10.4
(2.5) 		9.7
(1.8) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181135_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10552
Sequence Type Exemplar sequence
Representative Public ID R08C7.9 NCBI
Target Description R08C7.9 /REP_DB=WormBase Gene ID /WP=CE07432 /TR=Q21842 /GB=AAC48077.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068164(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068164 NCBI Caenorhabditis elegans R08C7.9 (R08C7.9) mRNA, complete cds. 11/11 None
SNAP00000031358 ENSEMBL cdna:SNAP chromosome:CEL140:IV:4438242:4439027:-1 11/11 None
R08C7.9 ENSEMBL cdna:known chromosome:CEL140:IV:4437811:4439312:-1 gene:R08C7.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4438164-4441119(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R08C7.9
Entrez Gene 177210 Entrez gene
SwissProt Q21842 EMBL-EBI
WormBase CE33682 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAO91706 Hypothetical protein R08C7.9 [Caenorhabditis elegans] ref|NP_500565.2| R08C7.9 [Caenorhabditis elegans] 0.0
blast T29660 hypothetical protein R08C7.9 - Caenorhabditis elegans 1.0E-170
blast AAO91706 Hypothetical protein R08C7.9 [Caenorhabditis elegans] ref|NP_500565.2| R08C7.9 [Caenorhabditis elegans] 1.0E-127
blast T29660 hypothetical protein R08C7.9 - Caenorhabditis elegans 1.0E-127
blast AAO91704 Hypothetical protein R08C7.13 [Caenorhabditis elegans] ref|NP_001023331.1| R08C7.13 [Caenorhabditis elegans] 8.0E-99
blast AAO91704 Hypothetical protein R08C7.13 [Caenorhabditis elegans] ref|NP_001023331.1| R08C7.13 [Caenorhabditis elegans] 2.0E-54
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 2.9E-5
Sequence
Target Sequence 
>C. ELEGANS:181135_AT
tttttggatcatgctctcgaagtatgcaacgaagtatgcattattagaattactctcctc
tgtgataagattgattgcgacgggaataaaatttgtgatatgttcgatggtttgacaatt
gaatcattatcagtgtgttttgaacacttacaattagttaatccttttttccaacaaatg
ttgacgaaattttctcgccaatctaaaatggttagctggatgggaaatccatttccacat
gacgattcacatcgaatacaaataattctgtgtcaattcattcactcagttcaccttccg
gcaaaacttttttctaatgtccgcgtactgctggatggcctgttaatcgccgacgctgtt
ttgctgtggaatatggataaaatgtgcttgaaagacgtcaacatattcttgaaacactgg
attcatggttccaacactaaacttgaatccgccagtttgcgtcttgatgcccaaatggca
cctcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTTTGGATCATGCTCTCGAAGTAT 671 673 1237 Antisense
TTAGAATTACTCTCCTCTGTGATAA 115 683 1280 Antisense
TAATCCTTTTTTCCAACAAATGTTG 81 635 1395 Antisense
GACGAAATTTTCTCGCCAATCTAAA 340 367 1419 Antisense
ATCCATTTCCACATGACGATTCACA 694 39 1463 Antisense
TAATGTCCGCGTACTGCTGGATGGC 610 635 1551 Antisense
TGGATGGCCTGTTAATCGCCGACGC 95 549 1568 Antisense
GCCGACGCTGTTTTGCTGTGGAATA 691 283 1585 Antisense
CCAACACTAAACTTGAATCCGCCAG 462 275 1667 Antisense
AATCCGCCAGTTTGCGTCTTGATGC 251 167 1682 Antisense
GTCTTGATGCCCAAATGGCACCTCC 258 469 1697 Antisense
Sequence Source Affymetrix Proprietary Database