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[181134_at]

Description Y41C4A.7 /REP_DB=WormBase Gene ID /WP=CE20247 /TR=Q9U2I5 /GB=CAB63356.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 54      4grp_total > 48      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 28
1 2 3 4 range
A 6.9
(-3)
A 		17.1
(2.5)
A 		18
(3)
A 		13
(0.3)
A 		11
B 6.4
(-3)
A 		13.4
(-0.6)
A 		23.9
(3)
A 		6.3
(-3)
A 		18
C 10.9
(-3)
A 		15.8
(-1.7)
A 		34
(3)
A 		18.6
(-1)
A 		23
avr 8.1
(-3) 		15.4
(-0.5) 		25.3
(3) 		12.6
(-1.4) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 10
(-1.3)
A 		8.6
(-1.7)
A 		26.9
(3)
A 		7.7
(-1.9)
A 		3.5
(-3)
A 		10.8
(-1.1)
A 		23
B 15.3
(1.5)
A 		6
(-1.6)
A 		18.7
(2.6)
A 		1.9
(-3)
A 		19.8
(3)
A 		9.3
(-0.5)
A 		18
C 10.7
(-2.1)
A 		9.1
(-3)
A 		12
(-1.4)
A 		14.6
(-0)
A 		10
(-2.5)
A 		20.2
(3)
A 		11
avr 12
(-0.8) 		7.9
(-3) 		19.2
(3) 		8.1
(-2.9) 		11.1
(-1.3) 		13.4
(-0.1) 		11
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 2.5
(-1.7)
A 		3.7
(0.9)
A 		4.7
(3)
A 		1.9
(-3)
A 		3
B 2
(-2)
A 		3.3
(-0.1)
A 		5.5
(3)
A 		1.3
(-3)
A 		4
C 3.6
(-2.7)
A 		4.5
(-2)
A 		11.8
(3)
A 		3.1
(-3)
A 		9
avr 2.7
(-2.3) 		3.8
(-1) 		7.3
(3) 		2.1
(-3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 1.8
(-2)
A 		3.1
(-0.4)
A 		5.9
(3)
A 		2
(-1.8)
A 		1
(-3)
A 		2.6
(-1)
A 		5
B 5.3
(0.8)
A 		2
(-1.8)
A 		4.5
(0.2)
A 		0.5
(-3)
A 		8
(3)
A 		3.5
(-0.6)
A 		8
C 3.9
(-1.3)
A 		2.8
(-3)
A 		3.1
(-2.5)
A 		2.9
(-2.8)
A 		3.2
(-2.4)
A 		6.7
(3)
A 		4
avr 3.7
(1.2) 		2.6
(-1.2) 		4.5
(3) 		1.8
(-3) 		4.1
(2.1) 		4.3
(2.6) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181134_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7655
Sequence Type Exemplar sequence
Representative Public ID Y41C4A.7 NCBI
Target Description Y41C4A.7 /REP_DB=WormBase Gene ID /WP=CE20247 /TR=Q9U2I5 /GB=CAB63356.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067112(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067112 NCBI Caenorhabditis elegans Y41C4A.7 (Y41C4A.7) mRNA, complete cds. 11/11 None
GENEFINDER00000034911 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:11696475:11702695:1 11/11 None
SNAP00000034884 ENSEMBL cdna:SNAP chromosome:CEL140:III:11698782:11699958:1 11/11 None
Y41C4A.7 ENSEMBL cdna:known chromosome:CEL140:III:11698782:11699963:1 gene:Y41C4A.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:11698777-11699954(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y41C4A.7
Entrez Gene 176600 Entrez gene
SwissProt Q9U2I5 EMBL-EBI
WormBase CE34116 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB63356 Hypothetical protein Y41C4A.7 [Caenorhabditis elegans] ref|NP_499513.2| Y41C4A.7 [Caenorhabditis elegans] 1.0E-139
blast CAB63356 Hypothetical protein Y41C4A.7 [Caenorhabditis elegans] ref|NP_499513.2| Y41C4A.7 [Caenorhabditis elegans] 1.0E-131
blast CAB63354 Hypothetical protein Y41C4A.5 [Caenorhabditis elegans] ref|NP_499514.2| Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-84) [Caenorhabditis elegans] 2.0E-95
blast CAE67681 Hypothetical protein CBG13244 [Caenorhabditis briggsae] 5.0E-66
blast CAE67681 Hypothetical protein CBG13244 [Caenorhabditis briggsae] 4.0E-63
Sequence
Target Sequence 
>C. ELEGANS:181134_AT
ggattctgggagcacgacatcacgaatttgtcgccgtttccggttgtatgcagggtccga
gccaccagcccatcgatgttcgtggtgaataagaatgtgttcttgttgaagcccatggat
ttttttaagttgatgatctcccgcaagcccggacaaatccgttcccaccacctcaaaata
gatgtgacacaattcgtggacaccttcaaccccatcaacctcctcgactacttcatcgcc
tcgaatccgttcaagacatttgtggttcggtatcacggagcaccgagatattggtccgat
gcgttagagatgaacagttggctgactggtgagcagttgaatgagcaatgggagaaggaa
atgaagaagacatcccaggagaagaaatcgtcgttggaaacgagtgaagtgagcagtgtg
aacgagtttgtggatgctgaagaggataatttccctgttcaacgggccgcgatgaacatc
accaatgtgctcacagtggcgtcacaagttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGATTCTGGGAGCACGACATCACGA 366 509 202 Antisense
ACATCACGAATTTGTCGCCGTTTCC 361 105 218 Antisense
TCGCCGTTTCCGGTTGTATGCAGGG 94 599 232 Antisense
CCAGCCCATCGATGTTCGTGGTGAA 666 271 266 Antisense
GTTCCCACCACCTCAAAATAGATGT 338 437 362 Antisense
GACACAATTCGTGGACACCTTCAAC 337 365 387 Antisense
TCGCCTCGAATCCGTTCAAGACATT 216 599 437 Antisense
TTGTGGTTCGGTATCACGGAGCACC 623 703 461 Antisense
GAGCACCGAGATATTGGTCCGATGC 242 389 479 Antisense
GATAATTTCCCTGTTCAACGGGCCG 152 421 646 Antisense
GTGCTCACAGTGGCGTCACAAGTTC 311 479 688 Antisense
Sequence Source Affymetrix Proprietary Database