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[181133_at]

Description E04A4.1 /REP_DB=WormBase Gene ID /WP=CE16962 /TR=O44475 /GB=AAB92036.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 28      4grp_total > 26      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 40
1 2 3 4 range
A 24.6
(-3)
A 		43.3
(1.2)
A 		31.1
(-1.6)
A 		51.5
(3)
A 		27
B 29
(-3)
P 		52.9
(3)
P 		39.4
(-0.4)
A 		50.4
(2.4)
M 		24
C 22.5
(-3)
A 		36.6
(-0.9)
P 		26.7
(-2.4)
A 		62.3
(3)
A 		40
avr 25.4
(-3) 		44.3
(0.9) 		32.4
(-1.6) 		54.7
(3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 84
1 2 3 4 5 6 range
A 85.6
(3)
P 		34.3
(-0.7)
A 		46.6
(0.2)
P 		1.7
(-3)
A 		65.3
(1.5)
M 		56.9
(0.9)
A 		84
B 40.8
(3)
P 		30.5
(0.8)
A 		29.4
(0.5)
A 		39.7
(2.8)
A 		13.2
(-3)
P 		40.7
(3)
A 		28
C 36.9
(-1.2)
P 		45.8
(3)
P 		45.8
(3)
A 		33.1
(-3)
A 		38
(-0.7)
P 		36.2
(-1.5)
P 		13
avr 54.4
(3) 		36.9
(-0.5) 		40.6
(0.2) 		24.8
(-3) 		38.8
(-0.2) 		44.6
(1) 		30
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 9
(1.7)
A 		9.4
(3)
A 		8.1
(-1.1)
A 		7.5
(-3)
A 		2
B 9.2
(-2.9)
P 		13.1
(3)
P 		9.1
(-3)
A 		10.7
(-0.6)
M 		4
C 7.4
(-3)
A 		10.5
(3)
P 		9.3
(0.7)
A 		10.5
(3)
A 		3
avr 8.5
(-3) 		11
(3) 		8.8
(-2.3) 		9.6
(-0.4) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 15.8
(1.8)
P 		12.2
(0.7)
A 		10.1
(0)
P 		0.4
(-3)
A 		19.7
(3)
M 		13.9
(1.2)
A 		19
B 14.2
(2.4)
P 		10.1
(-0.1)
A 		7.1
(-2)
A 		10.5
(0.1)
A 		5.4
(-3)
P 		15.2
(3)
A 		10
C 13.7
(2.8)
P 		14
(3)
P 		11.7
(1.1)
A 		6.7
(-3)
A 		12.3
(1.6)
P 		12.1
(1.4)
P 		7
avr 14.6
(3) 		12.1
(1.3) 		9.6
(-0.4) 		5.9
(-3) 		12.5
(1.6) 		13.7
(2.4) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181133_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10771
Sequence Type Exemplar sequence
Representative Public ID E04A4.1 NCBI
Target Description E04A4.1 /REP_DB=WormBase Gene ID /WP=CE16962 /TR=O44475 /GB=AAB92036.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Consensus/Exemplar Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade C annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068224
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068224 NCBI Caenorhabditis elegans E04A4.1 (E04A4.1) mRNA, complete cds. None
E04A4.1 ENSEMBL cdna:known chromosome:CEL140:IV:4737555:4738725:1 gene:E04A4.1 None
SNAP00000038150 ENSEMBL cdna:SNAP chromosome:CEL140:IV:4737630:4738725:1 None
GENEFINDER00000038155 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:4730627:4738840:1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4737560-4739141(+) 91.87 100.0
Public Domain and Genome References
Gene Title
Ensembl E04A4.1
Entrez Gene 184032 Entrez gene
SwissProt O44475 EMBL-EBI
WormBase CE32346 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB92036 Hypothetical protein E04A4.1 [Caenorhabditis elegans] ref|NP_500625.2| E04A4.1 [Caenorhabditis elegans] 0.0
blast AAB92036 Hypothetical protein E04A4.1 [Caenorhabditis elegans] ref|NP_500625.2| E04A4.1 [Caenorhabditis elegans] 1.0E-176
blast AAB92036 Hypothetical protein E04A4.1 [Caenorhabditis elegans] ref|NP_500625.2| E04A4.1 [Caenorhabditis elegans] 1.0E-170
blast AAB92037 Hypothetical protein E04A4.2 [Caenorhabditis elegans] ref|NP_500624.1| E04A4.2 [Caenorhabditis elegans] 6.0E-91
blast AAK84524 Hypothetical protein F25G6.1 [Caenorhabditis elegans] ref|NP_505211.3| F25G6.1 [Caenorhabditis elegans] 3.0E-86
blast NP_500634 Y17G9B.7 [Caenorhabditis elegans] gb|AAF60448.1| Hypothetical protein Y17G9B.7 [Caenorhabditis elegans] 1.0E-57
blast NP_500634 Y17G9B.7 [Caenorhabditis elegans] gb|AAF60448.1| Hypothetical protein Y17G9B.7 [Caenorhabditis elegans] 1.0E-49
blast AAO91704 Hypothetical protein R08C7.13 [Caenorhabditis elegans] ref|NP_001023331.1| R08C7.13 [Caenorhabditis elegans] 5.0E-47
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 0.0011
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000038155 1 926-948
Sequence
Target Sequence 
>C. ELEGANS:181133_AT
ggaccatattgttctatatcaccctatcaaatatgatctgaacgatttattcgttactaa
tacttattcactcatggttgacatgaaaattgaagatgttaatatgttcttaaaacactg
gattcacggactcgacagaaagttagaactagcttgctttggctacaaagaactccaatt
gaaaaatgaagcagttgttgaaatactcttcaaaaatgtggattatcaagttgcaccagc
ggaaagagaattgacaattcatcctaccggatcccagcagatatgtgtcaaaggtggtta
tgatgttagacgagtcgatggaacagaggaaaatattactgtcaatagtcagcgaaaatg
tctgactaaaattccgggttcactttttgaatcagttcattttttctgctattgcgccac
aaacgttcaaaggaatattctctatccacttgaatttatcaagattatgaaaatttacac
ttcttgggcggaaaaaagttttgacgcacataatacggaaacgccgaaaaattcccctat
taaacacgaacgccgtgatccacggccaattgaaaacgtcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGACCATATTGTTCTATATCACCCT 389 523 630 Antisense
ACACTGGATTCACGGACTCGACAGA 65 109 744 Antisense
GTTAGAACTAGCTTGCTTTGGCTAC 205 447 771 Antisense
GAATTGACAATTCATCCTACCGGAT 140 173 877 Antisense
CCTACCGGATCCCAGCAGATATGTG 291 267 892 Antisense
GTCTGACTAAAATTCCGGGTTCACT 675 471 989 Antisense
GTTCATTTTTTCTGCTATTGCGCCA 29 445 1024 Antisense
GCTATTGCGCCACAAACGTTCAAAG 634 303 1037 Antisense
AAGGAATATTCTCTATCCACTTGAA 500 161 1059 Antisense
TAAACACGAACGCCGTGATCCACGG 188 641 1170 Antisense
GATCCACGGCCAATTGAAAACGTCC 603 415 1186 Antisense
Sequence Source Affymetrix Proprietary Database