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[181132_s_at]

Description F49F1.7 /REP_DB=WormBase Gene ID /WP=CE17090 /TR=Q9GZE2 /GB=AAF99961.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 08      4grp_total > 56      6grp_total_sub > Decrease      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 226
1 2 3 4 range
A 106.1
(-1.8)
A 		186.8
(2.9)
A 		188.2
(3)
A 		86.1
(-3)
A 		102
B 79
(-3)
A 		135.4
(-0.9)
A 		243.3
(3)
A 		84.1
(-2.8)
A 		164
C 82.5
(-1.4)
A 		180.9
(1.2)
A 		247.4
(3)
A 		21.3
(-3)
A 		226
avr 89.2
(-2.1) 		167.7
(0.8) 		226.3
(3) 		63.8
(-3) 		163

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 92
1 2 3 4 5 6 range
A 80.6
(3)
A 		46.6
(0.1)
A 		30.3
(-1.3)
A 		70.9
(2.2)
A 		9.8
(-3)
A 		11.1
(-2.9)
A 		71
B 87.5
(2.2)
A 		23.4
(-2)
A 		99.8
(3)
A 		22.7
(-2)
A 		7.6
(-3)
A 		57.8
(0.3)
A 		92
C 21.2
(-1.4)
A 		18.3
(-1.8)
A 		22.6
(-1.2)
A 		40.3
(1.2)
A 		9.6
(-3)
A 		53.5
(3)
A 		44
avr 63.1
(3) 		29.4
(-0.7) 		50.9
(1.6) 		44.6
(0.9) 		9
(-3) 		40.8
(0.5) 		54
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 83
1 2 3 4 range
A 38.6
(1.3)
A 		40.5
(1.6)
A 		49.2
(3)
A 		12.6
(-3)
A 		37
B 25.2
(-1.9)
A 		33.4
(-0.6)
A 		56.4
(3)
A 		17.9
(-3)
A 		39
C 27.3
(-1.3)
A 		52
(0.5)
A 		86.2
(3)
A 		3.6
(-3)
A 		83
avr 30.4
(-0.8) 		42
(0.5) 		63.9
(3) 		11.4
(-3) 		53

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 14.9
(1.8)
A 		16.6
(2.5)
A 		6.6
(-1.5)
A 		18
(3)
A 		3
(-2.9)
A 		2.7
(-3)
A 		15
B 30.4
(3)
A 		7.8
(-2)
A 		24.2
(1.6)
A 		6
(-2.4)
A 		3.1
(-3)
A 		21.6
(1.1)
A 		27
C 7.8
(-1.1)
A 		5.6
(-2)
A 		5.7
(-1.9)
A 		8.1
(-1)
A 		3.1
(-3)
A 		17.9
(3)
A 		15
avr 17.7
(3) 		10
(-0.2) 		12.2
(0.7) 		10.7
(0.1) 		3.1
(-3) 		14.1
(1.5) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 181132_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10883
Sequence Type Exemplar sequence
Representative Public ID F49F1.7 NCBI
Target Description F49F1.7 /REP_DB=WormBase Gene ID /WP=CE17090 /TR=Q9GZE2 /GB=AAF99961.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068087(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068087 NCBI Caenorhabditis elegans F49F1.7 (F49F1.7) mRNA, complete cds. 11/11 None
SNAP00000034586 ENSEMBL cdna:SNAP chromosome:CEL140:IV:4123579:4125624:-1 11/11 None
GENEFINDER00000034602 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:4123579:4134811:-1 11/11 None
F49F1.7 ENSEMBL cdna:known chromosome:CEL140:IV:4123531:4125696:-1 gene:F49F1.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4123584-4125702(-) 85.48 100.0
Public Domain and Genome References
Gene Title
Ensembl F49F1.7
Entrez Gene 177177 Entrez gene
SwissProt Q9GZE2 EMBL-EBI
WormBase CE17090 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF99964 Hypothetical protein F49F1.8 [Caenorhabditis elegans] ref|NP_500489.2| F49F1.8 [Caenorhabditis elegans] 1.0E-149
blast AAF99961 Hypothetical protein F49F1.7 [Caenorhabditis elegans] ref|NP_500488.1| F49F1.7 [Caenorhabditis elegans] 1.0E-111
blast AAF99961 Hypothetical protein F49F1.7 [Caenorhabditis elegans] ref|NP_500488.1| F49F1.7 [Caenorhabditis elegans] 1.0E-107
blast AAF99961 Hypothetical protein F49F1.7 [Caenorhabditis elegans] ref|NP_500488.1| F49F1.7 [Caenorhabditis elegans] 1.0E-101
blast CAB05245 Hypothetical protein K03D3.8 [Caenorhabditis elegans] ref|NP_502939.1| K03D3.8 [Caenorhabditis elegans] 1.0E-92
blast AAF99963 Hypothetical protein F49F1.6 [Caenorhabditis elegans] ref|NP_500487.2| F49F1.6 [Caenorhabditis elegans] 4.0E-43
blast AAF99963 Hypothetical protein F49F1.6 [Caenorhabditis elegans] ref|NP_500487.2| F49F1.6 [Caenorhabditis elegans] 6.0E-41
blast AAF99968 Hypothetical protein F49F1.1 [Caenorhabditis elegans] ref|NP_500485.1| F49F1.1 [Caenorhabditis elegans] 1.0E-33
Protein Domains
Database ID Description E-Value
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 1.4E-9
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 2.3E-8
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 5.5E-5
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 2.0E-11
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 5.2E-6
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 2.3E-8
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 5.5E-5
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 2.0E-11
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 1.4E-9
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 2.3E-8
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 5.5E-5
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 2.0E-11
Pfam IPR005162 EMBL-EBI Retrotransposon gag protein 2.6E-5
Sequence
Target Sequence 
>C. ELEGANS:181132_S_AT
gaagtcagtgccagctaacctgtggagaatgtgcgcctgatccgactacctgcagtgaca
ctaattcggattgtgagaagtttcacgaaatgtgtgtgatgatgccatatagggaacaat
gcccgaaatcctgtggaatatgcgattctcccgccccaacctggtgcatggatcattggc
cggaatgcccaaaatatcaagttccctgctcggaaactgagagaataaagtgccccagaa
gctgtgatgcgtgcgggaatccgtccacaaaggaggcgtctgtgactacaactaatggcc
acctgcaaattgggactacaagaagactacaggctacacagactacaaagagtacagaga
ctacagagactacagagactacaaaggctataaagactacaaagactacagagactacaa
aagctacaaaaactacaactccatcaactaccgtcaaaaccacgactacaaagccaaaac
cgccgtgcacggattcttcgccaaactgcacaacctgggcgaagaatggcttttgcacca
acacctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGTCAGTGCCAGCTAACCTGTGG 197 337 134 Antisense
TGTGGAGAATGTGCGCCTGATCCGA 343 555 154 Antisense
TCCGACTACCTGCAGTGACACTAAT 403 595 174 Antisense
CTGTGGAATATGCGATTCTCCCGCC 621 239 264 Antisense
ACCTGGTGCATGGATCATTGGCCGG 407 87 292 Antisense
CAAAATATCAAGTTCCCTGCTCGGA 691 189 323 Antisense
TGTGATGCGTGCGGGAATCCGTCCA 139 555 376 Antisense
TGACTACAACTAATGGCCACCTGCA 509 571 416 Antisense
GAAGACTACAGGCTACACAGACTAC 607 339 455 Antisense
CAAAACCGCCGTGCACGGATTCTTC 81 191 608 Antisense
AGAATGGCTTTTGCACCAACACCTT 532 73 656 Antisense
Sequence Source Affymetrix Proprietary Database