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[181130_s_at]

Description Y69E1A.1 /REP_DB=WormBase Gene ID /WP=CE22808 /TR=Q9XW39 /GB=CAA22256.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 98      4grp_total > 26      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 2.4
(-3)
A 		8.6
(-1.6)
A 		3.3
(-2.8)
A 		28.6
(3)
A 		26
B 2.1
(-3)
A 		7.5
(2.1)
A 		6.1
(0.8)
A 		8.5
(3)
A 		6
C 1.6
(-2.9)
A 		9.5
(3)
A 		1.5
(-3)
A 		2.3
(-2.4)
A 		8
avr 2
(-3) 		8.5
(0.5) 		3.6
(-2.1) 		13.1
(3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 861
1 2 3 4 5 6 range
A 33.8
(-2.8)
A 		6.4
(-3)
A 		9.2
(-3)
A 		52.7
(-2.7)
A 		435.7
(0)
P 		862
(3)
P 		856
B 19.6
(-2.9)
A 		1.4
(-3)
A 		3.8
(-3)
A 		40.5
(-2.7)
A 		502.4
(1.1)
P 		729.9
(3)
P 		729
C 2.5
(-3)
A 		11.4
(-2.9)
A 		1.5
(-3)
A 		68.9
(-2.5)
A 		504.6
(1.1)
P 		742.1
(3)
P 		741
avr 18.6
(-2.9) 		6.4
(-3) 		4.8
(-3) 		54
(-2.6) 		480.9
(0.7) 		778
(3) 		773
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4
1 2 3 4 range
A 0.9
(-3)
A 		1.9
(-1.2)
A 		0.9
(-3)
A 		4.2
(3)
A 		3
B 0.7
(-3)
A 		1.9
(3)
A 		1.4
(0.5)
A 		1.8
(2.5)
A 		1
C 0.5
(-2.7)
A 		2.7
(3)
A 		0.5
(-2.7)
A 		0.4
(-3)
A 		2
avr 0.7
(-3) 		2.2
(3) 		0.9
(-2.2) 		2.1
(2.6) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 272
1 2 3 4 5 6 range
A 6.2
(-2.9)
A 		2.3
(-3)
A 		2
(-3)
A 		13.4
(-2.7)
A 		131.5
(0.7)
P 		209.9
(3)
P 		208
B 6.8
(-2.9)
A 		0.5
(-3)
A 		0.9
(-3)
A 		10.7
(-2.8)
A 		204.1
(1.5)
P 		272.2
(3)
P 		272
C 0.9
(-3)
A 		3.5
(-2.9)
A 		0.4
(-3)
A 		13.8
(-2.7)
A 		163.3
(0.9)
P 		248.4
(3)
P 		248
avr 4.6
(-2.9) 		2.1
(-3) 		1.1
(-3) 		12.6
(-2.7) 		166.3
(1.1) 		243.5
(3) 		242
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 181130_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8746
Sequence Type Exemplar sequence
Representative Public ID Y69E1A.1 NCBI
Target Description Y69E1A.1 /REP_DB=WormBase Gene ID /WP=CE22808 /TR=Q9XW39 /GB=CAA22256.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074118(11), NM_069637(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074118 NCBI Caenorhabditis elegans T16A9.5 (T16A9.5) mRNA, complete cds. 11/11 A 
NM_069637 NCBI Caenorhabditis elegans Y69E1A.1 (Y69E1A.1) mRNA, complete cds. 11/11 None
SNAP00000037371 ENSEMBL cdna:SNAP chromosome:CEL140:IV:10947239:10948706:-1 11/11 None
GENEFINDER00000037381 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:10947239:10948706:-1 11/11 None
SNAP00000032389 ENSEMBL cdna:SNAP chromosome:CEL140:V:14216216:14217517:-1 11/11 None
GENEFINDER00000032395 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:14216216:14217517:-1 11/11 None
Y69E1A.1 ENSEMBL cdna:known chromosome:CEL140:IV:10947232:10948846:-1 gene:Y69E1A.1 11/11 None
T16A9.5 ENSEMBL cdna:known chromosome:CEL140:V:14216216:14217588:-1 gene:T16A9.5 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:14216215-14217517(-) 94.94 94.94
chrIV:10947244-10948712(-) 100.0 100.0
Public Domain and Genome References
Gene Title

Ensembl Y69E1A.1
T16A9.5
Entrez Gene 177991 Entrez gene
179924 Entrez gene
SwissProt Q22524 EMBL-EBI
Q9XW39 EMBL-EBI
WormBase CE13728 Wormbase
CE22808 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB00878 Hypothetical protein T16A9.5 [Caenorhabditis elegans] ref|NP_506519.1| T16A9.5 [Caenorhabditis elegans] 1.0E-125
blast CAA22256 Hypothetical protein Y69E1A.1 [Caenorhabditis elegans] ref|NP_502038.1| Y69E1A.1 [Caenorhabditis elegans] 1.0E-124
blast CAA22256 Hypothetical protein Y69E1A.1 [Caenorhabditis elegans] ref|NP_502038.1| Y69E1A.1 [Caenorhabditis elegans] 1.0E-122
Protein Domains
Database ID Description E-Value
Pfam IPR008574 EMBL-EBI Caenorhabditis elegans protein of unknown function DUF856 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506519.1 6 122-144,151-170,185-207,212-234,249-271,292-314
NP_502038.1 6 122-144,151-170,185-207,212-234,249-271,292-314
Y69E1A.1 6 122-144,151-170,185-207,212-234,249-271,292-314
T16A9.5 6 122-144,151-170,185-207,212-234,249-271,292-314
SNAP00000037371 6 122-144,151-170,185-207,212-234,249-271,292-314
GENEFINDER00000037381 6 122-144,151-170,185-207,212-234,249-271,292-314
SNAP00000032389 6 122-144,151-170,185-207,212-234,249-271,292-314
GENEFINDER00000032395 6 122-144,151-170,185-207,212-234,249-271,292-314
Sequence
Target Sequence 
>C. ELEGANS:181130_S_AT
tttcggatggtcttcaattctgcttcttggagctggaattgcaagcattattggaggata
tgtactttctccaattttcggaattttcattgggagaggtggatcggccattttggcaac
tcttgccattcctgcgttcggtgcttatcaactgaacaatgaggatggatcgacatcggg
aacacgattccaacttttggttttggcattggttcaaggacttttgatgggacactcgat
ttcatacacttatctgagtgctcaaccacttggtttcgttactccattggtcattgcgtt
tgcgtacccattgattgccggacaagttggaaccgcccgtactccattgctcggcggagc
tgttggagccgcattcggaactcaacttgtgctcggacttgtctctggatcactttcgtt
ctcttacttgctcttgtctgctctctacagtgcagcttctggtgctcttcttcaagttgc
cttcaagaacttgactgctcagaatagaatccacatgtatcagattctcttggtctcttc
gttcctcttctcgaaggccctcgtatacggat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTCGGATGGTCTTCAATTCTGCTT 376 671 378 Antisense
AGAGGTGGATCGGCCATTTTGGCAA 550 67 472 Antisense
GCCATTTTGGCAACTCTTGCCATTC 358 277 484 Antisense
GGTTTTGGCATTGGTTCAAGGACTT 138 507 576 Antisense
ACACTTATCTGAGTGCTCAACCACT 646 109 623 Antisense
TTGGAGCCGCATTCGGAACTCAACT 94 705 740 Antisense
GCATTCGGAACTCAACTTGTGCTCG 653 307 748 Antisense
CTCTTGTCTGCTCTCTACAGTGCAG 704 229 808 Antisense
TCTCTACAGTGCAGCTTCTGGTGCT 125 613 819 Antisense
GTTGCCTTCAAGAACTTGACTGCTC 163 441 853 Antisense
TTCTCGAAGGCCCTCGTATACGGAT 55 693 925 Antisense
Sequence Source Affymetrix Proprietary Database