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[181129_at]

Description B0507.6 /REP_DB=WormBase Gene ID /WP=CE07765 /TR=Q22878 /GB=AAB04814.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 59      6grp_high1_10_10 > 94      4grp_high_8_8 > 13      6grp_highest_nonorm > 90      6grp_total > 85      4grp_total > 03      6grp_highest_sub > In      6grp_high1_sub > In      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 188
1 2 3 4 range
A 68.1
(-2.7)
P 		66.1
(-2.8)
A 		62.2
(-3)
M 		170.2
(3)
P 		108
B 52.1
(-2.5)
P 		50.4
(-2.5)
P 		36.2
(-3)
A 		212.3
(3)
P 		176
C 74.1
(-2)
M 		63.4
(-2.4)
P 		44.9
(-3)
P 		224
(3)
P 		179
avr 64.8
(-2.3) 		60
(-2.5) 		47.8
(-3) 		202.2
(3) 		154

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 104
1 2 3 4 5 6 range
A 149.4
(0.7)
P 		102.5
(-3)
P 		112.4
(-2.2)
P 		130.7
(-0.8)
P 		177.8
(2.9)
P 		178.5
(3)
P 		76
B 97.3
(-3)
P 		101.8
(-2.7)
P 		149.7
(0.6)
P 		185.5
(3)
P 		149.7
(0.6)
P 		170.3
(2)
P 		88
C 95.6
(-3)
P 		134.7
(-0.7)
P 		150.3
(0.2)
P 		197.4
(2.9)
P 		119.3
(-1.6)
P 		199.2
(3)
P 		104
avr 114.1
(-2.9) 		113
(-3) 		137.5
(-0.9) 		171.2
(2) 		148.9
(0.1) 		182.7
(3) 		70
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 37
1 2 3 4 range
A 24.8
(2.9)
P 		14.3
(-3)
A 		16.3
(-1.9)
M 		24.9
(3)
P 		11
B 16.6
(-1.7)
P 		12.4
(-2.3)
P 		8.4
(-3)
A 		45.2
(3)
P 		37
C 24.5
(-0.6)
M 		18.2
(-2.3)
P 		15.7
(-3)
P 		37.8
(3)
P 		22
avr 22
(-0.7) 		15
(-2.6) 		13.5
(-3) 		36
(3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 27.5
(-2.4)
P 		36.5
(-0.5)
P 		24.5
(-3)
P 		33.2
(-1.2)
P 		53.6
(3)
P 		43.5
(0.9)
P 		29
B 33.9
(-3)
P 		33.9
(-3)
P 		36.4
(-2.5)
P 		49.1
(0.1)
P 		60.8
(2.5)
P 		63.5
(3)
P 		30
C 35.4
(-3)
P 		41.1
(-1.9)
P 		38.2
(-2.5)
P 		39.7
(-2.2)
P 		38.6
(-2.4)
P 		66.7
(3)
P 		31
avr 32.3
(-3) 		37.2
(-1.9) 		33
(-2.8) 		40.7
(-1) 		51
(1.4) 		57.9
(3) 		26
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181129_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12499
Sequence Type Exemplar sequence
Representative Public ID B0507.6 NCBI
Target Description B0507.6 /REP_DB=WormBase Gene ID /WP=CE07765 /TR=Q22878 /GB=AAB04814.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072852(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072852 NCBI Caenorhabditis elegans B0507.6 (B0507.6) mRNA, complete cds. 11/11 None
B0507.6 ENSEMBL cdna:known chromosome:CEL140:V:8748750:8755654:1 gene:B0507.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000006052 7/11 Cross Hyb Matching Probes None
SNAP00000006053 2/11 Cross Hyb Matching Probes None
GENEFINDER00000006063 7/11 Cross Hyb Matching Probes None
GENEFINDER00000006068 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8748750-8755655(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl B0507.6
Entrez Gene 182013 Entrez gene
SwissProt Q22878 EMBL-EBI
WormBase CE07765 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB04814 Hypothetical protein B0507.6 [Caenorhabditis elegans] ref|NP_505253.1| B0507.6 [Caenorhabditis elegans] 0.0
blast CAB63203 Hypothetical protein F53H2.1 [Caenorhabditis elegans] ref|NP_507929.1| F53H2.1 [Caenorhabditis elegans] 1.0E-43
blast CAE71573 Hypothetical protein CBG18525 [Caenorhabditis briggsae] 2.0E-35
Protein Domains
Database ID Description E-Value
Pfam IPR007883 EMBL-EBI Protein of unknown function DUF713 5.8E-112
Sequence
Target Sequence 
>C. ELEGANS:181129_AT
gaaagcaactatcaaatcctccaagacaagctgcaatttttacaaccttcaacgattcac
tctacttcagatttgcacagaatttgcaacgaacatgagttctccccagtttatcaaaac
attgaatttccctcaatctccaatagctcgcctgcaaatccaaaaaaagtcacaacggaa
gaggtattaaaagccgagtctgatccactggaagccgaaaaaattattgatgatttcgaa
tctcaaaaacgttcggaacaatttgtcgaaatacagaacatagtttgcaatcagattcag
gactgcaaaagagaagatcgggaaaataaaaaaaagagtgatgaattggacattgctcaa
atttctcaggataagacggaagctattgattttgtggcatcacaacttttacttcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAAGCAACTATCAAATCCTCCAAG 581 359 1957 Antisense
AAATCCTCCAAGACAAGCTGCAATT 213 119 1970 Antisense
AGCTGCAATTTTTACAACCTTCAAC 549 81 1985 Antisense
CAACCTTCAACGATTCACTCTACTT 144 187 1999 Antisense
GATTCACTCTACTTCAGATTTGCAC 432 431 2010 Antisense
GAACATGAGTTCTCCCCAGTTTATC 149 351 2047 Antisense
TTGAATTTCCCTCAATCTCCAATAG 703 703 2078 Antisense
CAATAGCTCGCCTGCAAATCCAAAA 208 181 2097 Antisense
TAAAAGCCGAGTCTGATCCACTGGA 480 639 2144 Antisense
GACGGAAGCTATTGATTTTGTGGCA 590 375 2331 Antisense
TGTGGCATCACAACTTTTACTTCAA 455 555 2349 Antisense
Sequence Source Affymetrix Proprietary Database