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[181128_at]

Description Y41C4A.3 /REP_DB=WormBase Gene ID /WP=CE20243 /TR=Q9XWU6 /GB=CAA21546.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 27      6grp_total > 14      4grp_total > 21      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 77
1 2 3 4 range
A 51.9
(-3)
M 		62.6
(-0.8)
P 		56.2
(-2.1)
P 		80.9
(3)
A 		29
B 86.6
(3)
P 		19.3
(-3)
A 		68.7
(1.4)
M 		84.2
(2.8)
P 		67
C 72.4
(0.6)
P 		96.7
(3)
P 		36.9
(-3)
P 		65.2
(-0.2)
A 		60
avr 70.3
(1.3) 		59.5
(-1.5) 		53.9
(-3) 		76.8
(3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 112
1 2 3 4 5 6 range
A 118.4
(3)
A 		31
(-2)
A 		58.4
(-0.4)
A 		45.7
(-1.2)
A 		13.9
(-3)
A 		42.1
(-1.4)
A 		105
B 65.1
(1.3)
P 		88.1
(3)
P 		12.9
(-2.5)
A 		33.7
(-1)
A 		6.8
(-3)
A 		7.4
(-3)
A 		81
C 61.1
(2.2)
A 		56
(1.7)
A 		56.2
(1.7)
A 		69.4
(3)
A 		11.2
(-2.6)
A 		7.2
(-3)
A 		62
avr 81.5
(3) 		58.4
(1) 		42.5
(-0.3) 		49.6
(0.3) 		10.6
(-3) 		18.9
(-2.3) 		71
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 18.9
(3)
M 		13.6
(-1.5)
P 		14.7
(-0.5)
P 		11.8
(-3)
A 		7
B 27.6
(3)
P 		4.8
(-3)
A 		15.9
(-0.1)
M 		17.9
(0.4)
P 		23
C 24
(1.6)
P 		27.8
(3)
P 		12.9
(-2.3)
P 		11
(-3)
A 		17
avr 23.5
(3) 		15.4
(-1.9) 		14.5
(-2.5) 		13.6
(-3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 21.8
(3)
A 		11
(-0.7)
A 		12.7
(-0.1)
A 		11.6
(-0.5)
A 		4.2
(-3)
A 		10.3
(-0.9)
A 		18
B 22.6
(1.5)
P 		29.3
(3)
P 		3.1
(-2.9)
A 		8.9
(-1.6)
A 		2.8
(-3)
A 		2.8
(-3)
A 		27
C 22.6
(3)
A 		17.1
(1.4)
A 		14.3
(0.5)
A 		13.9
(0.4)
A 		3.6
(-2.6)
A 		2.4
(-3)
A 		20
avr 22.3
(3) 		19.1
(2) 		10
(-0.9) 		11.5
(-0.4) 		3.5
(-3) 		5.2
(-2.5) 		19
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181128_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7276
Sequence Type Exemplar sequence
Representative Public ID Y41C4A.3 NCBI
Target Description Y41C4A.3 /REP_DB=WormBase Gene ID /WP=CE20243 /TR=Q9XWU6 /GB=CAA21546.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067110(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067110 NCBI Caenorhabditis elegans Y41C4A.3 (Y41C4A.3) mRNA, complete cds. 11/11 None
SNAP00000034879 ENSEMBL cdna:SNAP chromosome:CEL140:III:11682835:11683326:1 11/11 None
GENEFINDER00000034908 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:11682838:11683326:1 11/11 None
Y41C4A.3 ENSEMBL cdna:known chromosome:CEL140:III:11682838:11683326:1 gene:Y41C4A.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:11682833-11683322(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y41C4A.3
Entrez Gene 353423 Entrez gene
SwissProt Q9XWU6 EMBL-EBI
WormBase CE20243 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21546 Hypothetical protein Y41C4A.3 [Caenorhabditis elegans] ref|NP_499511.1| Y41C4A.3 [Caenorhabditis elegans] 5.0E-77
Sequence
Target Sequence 
>C. ELEGANS:181128_AT
gtcagtcagacacatttattctcgaaattaatattccattcttttttatcgttcctcttc
aatgatttttcacatctctccgcttcattacctcctcttattgatctttcaacaaaaaaa
aaacttctcgcacgagcttcagagggcgccacgtcttcgtcttcaccacttccaccggcg
tcgacggcgacgctctccgcgttccgaccgccggcaagaatgattccgccgccggtggtt
cttccacagcaatatgcgccactgccgggcttcacaccacttttgccagctcaagcaatg
atggcgaatttcccgccaaatgcgctctaccagttaggcaccccaccgttcgagaatgga
aataatcggattcggttcaaagatgctgccatggtcgttctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCAGTCAGACACATTTATTCTCGA 45 467 52 Antisense
TATTCCATTCTTTTTTATCGTTCCT 331 665 83 Antisense
TCGTTCCTCTTCAATGATTTTTCAC 364 603 100 Antisense
TTACCTCCTCTTATTGATCTTTCAA 296 683 139 Antisense
TTCTCGCACGAGCTTCAGAGGGCGC 703 683 176 Antisense
TCCGACCGCCGGCAAGAATGATTCC 615 593 254 Antisense
CACCACTTTTGCCAGCTCAAGCAAT 101 203 326 Antisense
GCAATGATGGCGAATTTCCCGCCAA 673 321 346 Antisense
AAATGCGCTCTACCAGTTAGGCACC 321 117 369 Antisense
GCACCCCACCGTTCGAGAATGGAAA 521 313 389 Antisense
CAAAGATGCTGCCATGGTCGTTCTG 278 189 429 Antisense
Sequence Source Affymetrix Proprietary Database