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[181127_s_at]

Description C16A3.8 /REP_DB=WormBase Gene ID /WP=CE27691 /TR=Q18033 /GB=AAB47593.3 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 84      6grp_high1_10_10 > 57      4grp_highest_8_8 > 45      4grp_high_8_8 > 01      6grp_highest_nonorm > 83      6grp_total > 47      4grp_total > 15      6grp_highest_sub > Cu      6grp_cgc > 27      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 369
1 2 3 4 range
A 662.3
(3)
P 		476.3
(-1.1)
P 		392.3
(-3)
P 		656.8
(2.9)
P 		270
B 509
(0.3)
P 		458.2
(-1.2)
P 		399.9
(-3)
P 		598.8
(3)
P 		199
C 607.4
(3)
P 		293.6
(-3)
P 		491.3
(0.8)
P 		502.4
(1)
P 		314
avr 592.9
(3) 		409.4
(-3) 		427.8
(-2.4) 		586
(2.8) 		184

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 297
1 2 3 4 5 6 range
A 556.9
(1.7)
P 		493.2
(-0.4)
P 		414.3
(-3)
P 		476.3
(-1)
P 		560
(1.8)
P 		596.3
(3)
P 		182
B 552.1
(0.9)
P 		497.9
(-0.4)
P 		451
(-1.6)
P 		531.6
(0.4)
P 		395.7
(-3)
P 		634.1
(3)
P 		238
C 515.8
(1.1)
P 		500.9
(0.8)
P 		368.1
(-2.3)
P 		423.4
(-1)
P 		337.3
(-3)
P 		597.9
(3)
P 		261
avr 541.6
(0.9) 		497.3
(-0.4) 		411.1
(-3) 		477.1
(-1) 		431
(-2.4) 		609.4
(3) 		198
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 157
1 2 3 4 range
A 241.2
(3)
P 		103.4
(-2.7)
P 		102.5
(-2.7)
P 		96.1
(-3)
P 		145
B 162.3
(3)
P 		113.2
(-1.2)
P 		92.7
(-3)
P 		127.6
(0)
P 		70
C 201.1
(3)
P 		84.4
(-3)
P 		171.2
(1.5)
P 		84.7
(-3)
P 		117
avr 201.5
(3) 		100.3
(-3) 		122.1
(-1.7) 		102.8
(-2.9) 		101

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 151
1 2 3 4 5 6 range
A 102.7
(-2.1)
P 		175.4
(3)
P 		90.2
(-3)
P 		120.8
(-0.8)
P 		169
(2.5)
P 		145.2
(0.9)
P 		85
B 192.1
(0.9)
P 		165.7
(-0.3)
P 		109.5
(-3)
P 		140.8
(-1.5)
P 		160.8
(-0.6)
P 		236.5
(3)
P 		127
C 191.2
(2.5)
P 		152.8
(0.5)
P 		93.7
(-2.6)
P 		85.1
(-3)
P 		109.1
(-1.7)
P 		200.1
(3)
P 		115
avr 162
(1) 		164.6
(1.2) 		97.8
(-3) 		115.6
(-1.9) 		146.3
(0) 		193.9
(3) 		96
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 181127_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7265
Sequence Type Exemplar sequence
Representative Public ID C16A3.8 NCBI
Target Description C16A3.8 /REP_DB=WormBase Gene ID /WP=CE27691 /TR=Q18033 /GB=AAB47593.3 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065991(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065991 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-213) (tag-213) mRNA, complete cds. 11/11 None
SNAP00000030738 ENSEMBL cdna:SNAP chromosome:CEL140:III:6367979:6373709:1 11/11 None
GENEFINDER00000030796 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:6367983:6373709:1 11/11 None
C16A3.8 ENSEMBL cdna:known chromosome:CEL140:III:6367979:6373839:1 gene:C16A3.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:6367981-6373708(+) 96.77 100.0
Public Domain and Genome References
Gene Title
Gene Symbol tag-213
Ensembl C16A3.8
Entrez Gene 175900 Entrez gene
SwissProt Q18033 EMBL-EBI
WormBase CE27691 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:245649_AT expressed protein at
ATH1-121501:245647_AT expressed protein at
CANINE:1591883_AT similar to THO complex subunit 2 (Tho2) cfa
CANINE_2:CFAAFFX.28390.1.S1_AT similar to THO complex subunit 2 (Tho2) cfa
DROSOPHILA_2:1637329_A_AT dm
DROSGENOME1:155165_AT dm
CHICKEN:GGA.12003.1.S1_AT THO complex 2 gga
CHICKEN:GGA.12414.1.S1_S_AT THO complex 2 gga
CHICKEN:GGA.20034.1.S1_AT THO complex 2 gga
CHICKEN:GGAAFFX.22610.1.S1_S_AT THO complex 2 gga
CHICKEN:GGAAFFX.22610.3.S1_X_AT THO complex 2 gga
HG-U95AV2:32125_AT THO complex 2 hs
HU35KSUBA:RC_AA287735_AT THO complex 2 hs
HU35KSUBB:RC_N52168_AT THO complex 2 hs
HU35KSUBC:RC_AA448288_AT THO complex 2 hs
HU35KSUBD:RC_W68736_AT THO complex 2 hs
U133_X3P:HS.81376.0.S2_3P_AT THO complex 2 hs
U133_X3P:HS.81376.0.S1_3P_AT THO complex 2 hs
U133_X3P:HS.16411.1.S1_3P_A_AT THO complex 2 hs
U133_X3P:HS.16411.0.S1_3P_AT THO complex 2 hs
HG-U133A_2:212994_AT THO complex 2 hs
HG-U133_PLUS_2:212994_AT THO complex 2 hs
HG-U133A:212994_AT THO complex 2 hs
HG-U133A_2:222122_S_AT THO complex 2 hs
HG-U133_PLUS_2:222122_S_AT THO complex 2 hs
HG-U133A:222122_S_AT THO complex 2 hs
HG-U133_PLUS_2:226626_AT THO complex 2 hs
HG-U133B:226626_AT THO complex 2 hs
HG-U133_PLUS_2:226628_AT THO complex 2 hs
HG-U133B:226628_AT THO complex 2 hs
HG-U95AV2:32124_AT THO complex 2 hs
HG-U95B:43040_AT THO complex 2 hs
HG-U95B:48246_R_AT THO complex 2 hs
HG-U133_PLUS_2:230651_AT THO complex 2 hs
HG-U133B:230651_AT THO complex 2 hs
HG-U95B:58897_F_AT THO complex 2 hs
HG-U95B:58899_R_AT THO complex 2 hs
HG-U95D:80619_AT THO complex 2 hs
HG-U95D:90979_AT THO complex 2 hs
HU35KSUBB:RC_H78263_AT THO complex 2 hs
HU35KSUBB:RC_R98421_AT THO complex 2 hs
HU35KSUBC:RC_AA485222_AT THO complex 2 hs
U133_X3P:HS.149991.0.A1_3P_AT THO complex 2 hs
MG-U74BV2:113027_AT THO complex 2 mm
MG-U74CV2:134059_AT THO complex 2 mm
MOE430A:1437634_AT THO complex 2 mm
MOUSE430A_2:1437634_AT THO complex 2 mm
MOUSE430_2:1437634_AT THO complex 2 mm
MOE430A:1438736_AT THO complex 2 mm
MOUSE430A_2:1438736_AT THO complex 2 mm
MOUSE430_2:1438736_AT THO complex 2 mm
MOE430B:1444004_AT THO complex 2 mm
MOUSE430_2:1444004_AT THO complex 2 mm
MU19KSUBA:TC17703_AT THO complex 2 mm
MG-U74CV2:168380_AT PREDICTED: THO complex subunit 2 [Mus musculus], mRNA sequence mm
MU19KSUBA:TC16488_AT PREDICTED: THO complex subunit 2 [Mus musculus], mRNA sequence mm
MU19KSUBC:TC41490_AT PREDICTED: THO complex subunit 2 [Mus musculus], mRNA sequence mm
RG-U34A:RC_AI639237_AT similar to THO complex 2 rn
RAE230A:1385493_AT similar to THO complex 2 rn
RAT230_2:1385493_AT similar to THO complex 2 rn
RAE230B:1396803_AT similar to THO complex 2 rn
RAT230_2:1396803_AT similar to THO complex 2 rn
RAE230B:1386525_AT similar to THO complex 2 rn
RAT230_2:1386525_AT similar to THO complex 2 rn
Protein Similarities
Method ID Description E-Value
blast AAB47593 Temporarily assigned gene name protein 213 [Caenorhabditis elegans] ref|NP_498392.1| Temporarily Assigned Gene name family member (tag-213) [Caenorhabditis elegans] 0.0
blast CAE64412 Hypothetical protein CBG09105 [Caenorhabditis briggsae] 0.0
blast AAT68136 Tho2 [Danio rerio] ref|NP_001003847.1| Tho2 [Danio rerio] 0.0
Sequence
Target Sequence 
>C. ELEGANS:181127_S_AT
tgaagtgaagactccaagtccccctcctgcaaagaagactcgaattgttgatcgcttaaa
acggtctgatgaaccttcaaagaaagatgagaaagaatctccgaaggacacagaatctga
aaaaggagaaggtaagaaaagaagagaacgatcgaaagacaaagaaacaggaaaagagaa
acggttggagaaggataataaggaacgagaaaaggataaggaaaggaagcgagaaaatgg
agaaaaccagaaagaacaaaagattctcaaagatcagaagcaaaaaagcaagccgtccga
tgagaagcttgaagtggcaggacccgcgcttcccgacccagttcccaagaaagatgacaa
gaaaggctctcgaaaagcgattgagtttgatctagaggagccttcaaaatcaacatcgtc
ctctcgaaaagatcgcaaagatgatcgaaaagaaaaaaaagaagaacttccaaaggcatc
aagaatagcagagcctgcacgtgatgctggaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAAGTGAAGACTCCAAGTCCCCCT 496 573 3885 Antisense
CCCCTCCTGCAAAGAAGACTCGAAT 411 261 3905 Antisense
GAAGACTCGAATTGTTGATCGCTTA 674 339 3918 Antisense
GTTGATCGCTTAAAACGGTCTGATG 94 439 3931 Antisense
GAATCTCCGAAGGACACAGAATCTG 60 329 3979 Antisense
AAAAGCAAGCCGTCCGATGAGAAGC 146 131 4168 Antisense
AAGGCTCTCGAAAAGCGATTGAGTT 66 161 4247 Antisense
TTGAGTTTGATCTAGAGGAGCCTTC 449 705 4265 Antisense
TTCAAAATCAACATCGTCCTCTCGA 30 687 4287 Antisense
GAAGAACTTCCAAAGGCATCAAGAA 652 337 4345 Antisense
CAGAGCCTGCACGTGATGCTGGAAA 570 205 4373 Antisense
Sequence Source Affymetrix Proprietary Database