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[181126_at] 7TM chemoreceptor, str family

Description Y9C9A.7 /REP_DB=WormBase Gene ID /WP=CE21349 /TR=Q9N2T2 /GB=AAF60925.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 46      4grp_total > 03      6grp_cgc > 26      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 93
1 2 3 4 range
A 62.3
(3)
A 		29.8
(-3)
A 		32.3
(-2.5)
A 		53.1
(1.3)
P 		33
B 17.5
(-3)
A 		24.8
(-1.7)
A 		46.8
(2.2)
A 		51.3
(3)
A 		34
C 42.3
(-1.9)
A 		53.3
(-1.1)
P 		26.7
(-3)
A 		110.1
(3)
P 		83
avr 40.7
(-2.1) 		36
(-2.9) 		35.3
(-3) 		71.5
(3) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 43.3
(-1)
A 		39
(-1.9)
A 		50.4
(0.5)
P 		61.7
(3)
A 		34.1
(-3)
A 		54.5
(1.4)
A 		28
B 35.4
(-0.4)
P 		53.6
(3)
P 		22.2
(-2.8)
A 		21.1
(-3)
A 		41.4
(0.7)
P 		36.5
(-0.2)
P 		33
C 42.4
(0.7)
P 		56.5
(3)
P 		55.3
(2.8)
A 		50
(1.9)
A 		20.5
(-3)
A 		52
(2.3)
A 		36
avr 40.4
(-0.2) 		49.7
(3) 		42.6
(0.6) 		44.3
(1.2) 		32
(-3) 		47.7
(2.3) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 22.7
(3)
A 		6.5
(-3)
A 		8.5
(-2.3)
A 		7.8
(-2.5)
P 		16
B 5.6
(-3)
A 		6.1
(-2.4)
A 		10.9
(3)
A 		10.9
(3)
A 		5
C 14
(0)
A 		15.3
(0.9)
P 		9.3
(-3)
A 		18.6
(3)
P 		9
avr 14.1
(3) 		9.3
(-3) 		9.6
(-2.6) 		12.4
(0.9) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 8
(-3)
A 		13.9
(1.7)
A 		11
(-0.6)
P 		15.6
(3)
A 		10.3
(-1.2)
A 		13.3
(1.2)
A 		8
B 12.3
(0.3)
P 		17.8
(3)
P 		5.4
(-3)
A 		5.6
(-2.9)
A 		16.8
(2.5)
P 		13.6
(1)
P 		12
C 15.7
(2.1)
P 		17.2
(2.9)
P 		14.1
(1.2)
A 		10.1
(-1.1)
A 		6.6
(-3)
A 		17.4
(3)
A 		11
avr 12
(-1.2) 		16.3
(3) 		10.2
(-3) 		10.4
(-2.8) 		11.2
(-2) 		14.8
(1.5) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181126_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10744
Sequence Type Exemplar sequence
Representative Public ID Y9C9A.7 NCBI
Target Description Y9C9A.7 /REP_DB=WormBase Gene ID /WP=CE21349 /TR=Q9N2T2 /GB=AAF60925.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068276(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068276 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-153) (str-153) mRNA, complete cds. 11/11 None
SNAP00000021394 ENSEMBL cdna:SNAP chromosome:CEL140:IV:4934560:4936633:1 10/11 None
GENEFINDER00000021418 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:4934404:4936633:1 11/11 None
Y9C9A.7 ENSEMBL cdna:known chromosome:CEL140:IV:4934404:4936633:1 gene:Y9C9A.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4934409-4936639(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, str family
Gene Symbol str-153
Ensembl Y9C9A.7
Entrez Gene 189413 Entrez gene
SwissProt Q9N2T2 EMBL-EBI
WormBase CE35144 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_500677 Seven TM Receptor family member (str-153) [Caenorhabditis elegans] gb|AAF60925.2| Seven tm receptor protein 153 [Caenorhabditis elegans] 1.0E-170
blast CAE66376 Hypothetical protein CBG11636 [Caenorhabditis briggsae] 1.0E-135
blast NP_500677 Seven TM Receptor family member (str-153) [Caenorhabditis elegans] gb|AAF60925.2| Seven tm receptor protein 153 [Caenorhabditis elegans] 1.0E-104
blast CAE66408 Hypothetical protein CBG11675 [Caenorhabditis briggsae] 7.0E-90
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 1.5E-42
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 1.6E-19
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500677.2 7 10-32,44-66,91-113,133-155,202-224,252-274,284-306
Y9C9A.7 7 10-32,44-66,91-113,133-155,202-224,252-274,284-306
SNAP00000021394 4 36-54,101-123,151-173,183-205
GENEFINDER00000021418 7 10-32,44-66,91-113,133-155,202-224,252-274,284-306
Sequence
Target Sequence 
>C. ELEGANS:181126_AT
tattcggagggctctcctgggttttcttgtgctggtgttcaatggctccagatccagaat
tcactaactacctgagagacagtatcagagcaaattatgatctggacgctgattttataa
catatacaggatcatatttctatcgatttgaaagagatggaagcgtgaaatggagcatcg
agaattcacttggagcacttggattgaatgttttaatgatcatacccttcttcatcatat
tgatattcgggtacagaagttataagaaaatttcaaaattgatggctcagggagaatgtg
attacacaaaacggcttcaaatgcaactgtacaaagcattagtagctcagacaataatcc
cgatggttctcttatctttcccaatcggaatattattttctgctcctttacttcatttgg
atattgaaaatggtagtattattgtaacattcttttattccctata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATTCGGAGGGCTCTCCTGGGTTTT 5 659 500 Antisense
TCTTGTGCTGGTGTTCAATGGCTCC 460 617 524 Antisense
GGCTCCAGATCCAGAATTCACTAAC 329 539 543 Antisense
GGAGCATCGAGAATTCACTTGGAGC 661 519 671 Antisense
ATCATACCCTTCTTCATCATATTGA 182 31 718 Antisense
GTAGCTCAGACAATAATCCCGATGG 444 457 841 Antisense
TAATCCCGATGGTTCTCTTATCTTT 18 637 854 Antisense
TTCTCTTATCTTTCCCAATCGGAAT 424 691 866 Antisense
AATATTATTTTCTGCTCCTTTACTT 286 173 888 Antisense
TCTGCTCCTTTACTTCATTTGGATA 338 609 898 Antisense
TTGTAACATTCTTTTATTCCCTATA 632 707 941 Antisense
Sequence Source Affymetrix Proprietary Database