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[181123_at]

Description K02F3.8 /REP_DB=WormBase Gene ID /WP=CE01354 /TR=Q21150 /GB=AAK21423.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 95      4grp_total > 03      6grp_total_sub > Increase      6grp_rule_based > S5      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 265
1 2 3 4 range
A 36.1
(-2.3)
A 		5
(-3)
A 		7.8
(-2.9)
A 		269.7
(3)
P 		265
B 52.5
(-3)
A 		54.7
(-2.9)
A 		70
(-2.3)
A 		203.8
(3)
P 		151
C 72.2
(-1.9)
P 		69.9
(-2)
A 		42.7
(-3)
A 		203.8
(3)
P 		161
avr 53.6
(-2.6) 		43.2
(-2.9) 		40.2
(-3) 		225.8
(3) 		186

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 101
1 2 3 4 5 6 range
A 7.7
(-3)
A 		9.4
(-2.9)
A 		44.8
(-0.6)
A 		76.7
(1.5)
P 		99.1
(3)
A 		74.7
(1.4)
P 		91
B 47.4
(-2)
P 		65.3
(-0.6)
A 		35.8
(-3)
A 		88.6
(1.4)
P 		86
(1.1)
P 		108.5
(3)
P 		73
C 18.2
(-3)
A 		38.3
(-1.4)
A 		46.1
(-0.8)
A 		72.6
(1.4)
A 		92.7
(3)
P 		65.3
(0.8)
P 		75
avr 24.4
(-3) 		37.7
(-1.8) 		42.2
(-1.4) 		79.3
(1.8) 		92.6
(3) 		82.8
(2.1) 		68
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 42
1 2 3 4 range
A 13.2
(-1.1)
A 		1.1
(-3)
A 		2
(-2.9)
A 		39.5
(3)
P 		38
B 16.7
(-2.4)
A 		13.5
(-3)
A 		16.2
(-2.5)
A 		43.4
(3)
P 		30
C 23.9
(-0.2)
P 		20.1
(-1.4)
A 		14.9
(-3)
A 		34.4
(3)
P 		20
avr 17.9
(-1.5) 		11.6
(-2.9) 		11
(-3) 		39.1
(3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 1.4
(-3)
A 		3.4
(-2.6)
A 		9.8
(-1.2)
A 		19.4
(0.8)
P 		29.9
(3)
A 		18.2
(0.5)
P 		29
B 16.5
(-1.5)
P 		21.7
(-0.5)
A 		8.7
(-3)
A 		23.5
(-0.2)
P 		34.9
(2)
P 		40.4
(3)
P 		32
C 6.7
(-3)
A 		11.7
(-1.7)
A 		11.7
(-1.7)
A 		14.6
(-1)
A 		30
(3)
P 		21.9
(0.9)
P 		23
avr 8.2
(-3) 		12.3
(-1.9) 		10.1
(-2.5) 		19.2
(-0.2) 		31.6
(3) 		26.8
(1.8) 		23
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181123_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8192
Sequence Type Exemplar sequence
Representative Public ID K02F3.8 NCBI
Target Description K02F3.8 /REP_DB=WormBase Gene ID /WP=CE01354 /TR=Q21150 /GB=AAK21423.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064870(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064870 NCBI Caenorhabditis elegans K02F3.8 (K02F3.8) mRNA, complete cds. 11/11 None
GENEFINDER00000008350 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:835881:841314:-1 11/11 None
SNAP00000008337 ENSEMBL cdna:SNAP chromosome:CEL140:III:838427:839387:-1 11/11 None
K02F3.8 ENSEMBL cdna:known chromosome:CEL140:III:838427:839497:-1 gene:K02F3.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:838426-839497(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K02F3.8
Entrez Gene 186905 Entrez gene
SwissProt Q21150 EMBL-EBI
WormBase CE01354 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE56757 Hypothetical protein CBG24557 [Caenorhabditis briggsae] 0.0
blast AAK21419 Hypothetical protein K02F3.7 [Caenorhabditis elegans] 0.0
blast NP_497270 K02F3.7 [Caenorhabditis elegans] pir||T16529 hypothetical protein K02F3.7 - Caenorhabditis elegans 1.0E-156
blast AAK21423 Hypothetical protein K02F3.8 [Caenorhabditis elegans] ref|NP_497271.1| K02F3.8 [Caenorhabditis elegans] 1.0E-153
blast AAK21423 Hypothetical protein K02F3.8 [Caenorhabditis elegans] ref|NP_497271.1| K02F3.8 [Caenorhabditis elegans] 1.0E-140
blast CAE56471 Hypothetical protein CBG24185 [Caenorhabditis briggsae] 2.0E-88
blast CAE56471 Hypothetical protein CBG24185 [Caenorhabditis briggsae] 5.0E-87
blast CAE56757 Hypothetical protein CBG24557 [Caenorhabditis briggsae] 5.0E-72
Sequence
Target Sequence 
>C. ELEGANS:181123_AT
gtcttgagggtttgttggccactttttgttctacttacatgaaaaattgcaacatcaagg
ggatagtcaaagaagacaagtcaactgcgaaaactgaaaaagtattcccaacacctcgac
cattcatcggagcgctcccttcaagtacttcatccccaaaagttagttattgtgacggaa
acatggaccgttacaagaatgaatgtgaaaaggaagggttccagccggaagtgttctgcc
ggaaattcaaggaacaatgtgggaaactagatacaatcgacgcggataccacagatgatt
ttggcgatgattcacttgaaacccctgacgaatttgaagaacatcaatctcaaaggatag
agaaaaaaggagaagaagcggaagaagcgaaaccagaagcacaaggagtcggaactgacg
aagtaaccgcgtactgcacaaactacgtggagaactacaatttctattgtgtcggggaca
tgtctccagaaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCTTGAGGGTTTGTTGGCCACTTT 54 447 338 Antisense
GGCCACTTTTTGTTCTACTTACATG 386 543 354 Antisense
TGAAAAAGTATTCCCAACACCTCGA 434 569 432 Antisense
CTTCAAGTACTTCATCCCCAAAAGT 692 221 476 Antisense
GAAGGGTTCCAGCCGGAAGTGTTCT 587 331 550 Antisense
GGAAGTGTTCTGCCGGAAATTCAAG 502 529 564 Antisense
GATACAATCGACGCGGATACCACAG 582 423 607 Antisense
GATGATTTTGGCGATGATTCACTTG 205 411 631 Antisense
GTCGGAACTGACGAAGTAACCGCGT 652 471 745 Antisense
GTAACCGCGTACTGCACAAACTACG 604 459 760 Antisense
GTGTCGGGGACATGTCTCCAGAACA 358 487 806 Antisense
Sequence Source Affymetrix Proprietary Database