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[181122_at]

Description F23F1.7 /REP_DB=WormBase Gene ID /WP=CE09607 /TR=O17070 /GB=AAB70325.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 69      6grp_high1_10_10 > 85      4grp_highest_8_8 > 31      4grp_high_8_8 > 13      6grp_highest_nonorm > 96      6grp_total > 86      4grp_total > 11      6grp_highest_sub > In      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 922
1 2 3 4 range
A 545
(-2.1)
P 		605.1
(-1.7)
P 		407.1
(-3)
P 		1328.6
(3)
P 		922
B 583.3
(-1.5)
P 		576.9
(-1.6)
P 		406.9
(-3)
P 		1114.2
(3)
P 		707
C 541.8
(-2.3)
P 		632.8
(-1.4)
P 		469
(-3)
P 		1095.5
(3)
P 		627
avr 556.7
(-2) 		604.9
(-1.6) 		427.7
(-3) 		1179.4
(3) 		752

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 741
1 2 3 4 5 6 range
A 545.3
(-3)
P 		694.5
(-1.5)
P 		991
(1.5)
P 		895
(0.5)
P 		1089.5
(2.5)
P 		1137.6
(3)
P 		592
B 576.8
(-3)
P 		779.5
(-0.9)
P 		1058.2
(1.9)
P 		780.7
(-0.9)
P 		1074.6
(2.1)
P 		1166
(3)
P 		589
C 574.2
(-3)
P 		732.4
(-1.7)
P 		924.4
(-0)
P 		977.4
(0.4)
P 		1067.6
(1.2)
P 		1286.2
(3)
P 		712
avr 565.4
(-3) 		735.5
(-1.4) 		991.2
(1) 		884.4
(0) 		1077.2
(1.9) 		1196.6
(3) 		631
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 143
1 2 3 4 range
A 198.5
(3)
P 		131.3
(-1.4)
P 		106.4
(-3)
P 		194.5
(2.7)
P 		92
B 186
(0.8)
P 		142.5
(-1)
P 		94.3
(-3)
P 		237.4
(3)
P 		143
C 179.4
(1.5)
P 		181.9
(2.2)
P 		163.5
(-3)
P 		184.7
(3)
P 		21
avr 188
(1.8) 		151.9
(-0.8) 		121.4
(-3) 		205.5
(3) 		84

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 336
1 2 3 4 5 6 range
A 100.5
(-3)
P 		247
(0.9)
P 		215.8
(0)
P 		227
(0.3)
P 		328.8
(3)
P 		277
(1.6)
P 		228
B 200.7
(-3)
P 		259.4
(-1.5)
P 		257
(-1.6)
P 		206.8
(-2.8)
P 		436.6
(3)
P 		434.8
(3)
P 		236
C 212.8
(-2.6)
P 		223.5
(-2.3)
P 		235.3
(-2)
P 		196.6
(-3)
P 		345.5
(0.8)
P 		430.6
(3)
P 		234
avr 171.3
(-3) 		243.3
(-0.9) 		236
(-1.1) 		210.1
(-1.9) 		370.3
(2.7) 		380.8
(3) 		210
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181122_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5536
Sequence Type Exemplar sequence
Representative Public ID F23F1.7 NCBI
Target Description F23F1.7 /REP_DB=WormBase Gene ID /WP=CE09607 /TR=O17070 /GB=AAB70325.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061242(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061242 NCBI Caenorhabditis elegans F23F1.7 (F23F1.7) mRNA, complete cds. 11/11 None
GENEFINDER00000004434 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:35301:39487:-1 9/11 None
F23F1.7 ENSEMBL cdna:known chromosome:CEL140:II:38605:39487:-1 gene:F23F1.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000004425 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:38604-39487(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F23F1.7
Entrez Gene 184904 Entrez gene
SwissProt O17070 EMBL-EBI
WormBase CE29775 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB70324 Hypothetical protein F23F1.6 [Caenorhabditis elegans] ref|NP_493642.1| F23F1.6 [Caenorhabditis elegans] 0.0
blast CAE62828 Hypothetical protein CBG07007 [Caenorhabditis briggsae] 0.0
blast CAE72454 Hypothetical protein CBG19625 [Caenorhabditis briggsae] 0.0
blast AAB70325 Hypothetical protein F23F1.7 [Caenorhabditis elegans] ref|NP_493643.2| F23F1.7 [Caenorhabditis elegans] 1.0E-104
blast CAE62827 Hypothetical protein CBG07006 [Caenorhabditis briggsae] 8.0E-71
Protein Domains
Database ID Description E-Value
Pfam IPR004841 EMBL-EBI Amino acid permease-associated region 2.1E-12
Pfam IPR004841 EMBL-EBI Amino acid permease-associated region 1.4E-23
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000004434 14 175-197,207-229,241-263,304-326,339-358,378-400,413-435,483-505,512-530,535-557,596-618,622-644,656-678,682-701
Sequence
Target Sequence 
>C. ELEGANS:181122_AT
gtttttgtgcttagtgttaccagtgtatagtattccaattgccccatcttttaaggactt
acagacaataaaaccggactacaaattaataaagtatacattttcacgtgataatgaaac
cgatgtcatgagtccggatcctccgagtcttcaacttattccactggattttctttgcga
attctgccaagttgtgattttgaagctcaaagaacggcaaaaaacagaaaccaattttga
agaggttgttaagtataatctcagtaaagaaaaccttatttttgttcagacaatcaaaaa
agaatgcctaaattcgacagatgattcgagtagcttgtgtgatgtgataaatagagtgaa
tctggaacgactgaaaaaaggagatccaaaggatatatgtgaaagtcagggaatgtgcaa
tgggtctactggcacgacaactaaagacaatggaccgcctggtgtgtcacctaatcagag
tatgggaacccctgcaaagcct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTTTTGTGCTTAGTGTTACCAGTG 610 447 24 Antisense
CAGTGTATAGTATTCCAATTGCCCC 58 209 44 Antisense
CCAATTGCCCCATCTTTTAAGGACT 29 1 58 Antisense
AACCGATGTCATGAGTCCGGATCCT 212 147 141 Antisense
CCGAGTCTTCAACTTATTCCACTGG 529 263 166 Antisense
TTCCACTGGATTTTCTTTGCGAATT 367 699 182 Antisense
TTGCGAATTCTGCCAAGTTGTGATT 503 699 198 Antisense
GATGATTCGAGTAGCTTGTGTGATG 284 411 343 Antisense
GCAATGGGTCTACTGGCACGACAAC 670 321 440 Antisense
CCGCCTGGTGTGTCACCTAATCAGA 213 263 478 Antisense
GAGTATGGGAACCCCTGCAAAGCCT 215 399 501 Antisense
Sequence Source Affymetrix Proprietary Database