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[181121_at]

Description C46F2.1 /REP_DB=WormBase Gene ID /WP=CE17557 /TR=O61736 /GB=AAC16975.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 94      4grp_highest_8_8 > 05      4grp_high_8_8 > 29      6grp_total > 84      4grp_total > 26      6grp_high1_sub > In      6grp_total_sub > Hat      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 298
1 2 3 4 range
A 120.9
(-3)
P 		368.6
(2)
P 		224.2
(-0.9)
P 		418.6
(3)
P 		298
B 163.7
(-3)
P 		251.2
(1.2)
P 		239.6
(0.7)
P 		287.3
(3)
P 		124
C 138
(-3)
P 		212.7
(-0.9)
P 		200
(-1.2)
P 		347.6
(3)
P 		210
avr 140.9
(-3) 		277.5
(0.9) 		221.3
(-0.7) 		351.2
(3) 		210

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 78
1 2 3 4 5 6 range
A 56
(-3)
A 		72
(-1.6)
P 		121.6
(2.7)
P 		122.4
(2.8)
P 		125.2
(3)
P 		112.3
(1.9)
P 		69
B 51.7
(-3)
P 		89.6
(-0.1)
P 		77.7
(-1)
P 		119.4
(2.2)
P 		130
(3)
P 		125.1
(2.6)
P 		78
C 66.6
(-3)
P 		108.8
(1.4)
P 		87.1
(-0.9)
P 		99.1
(0.4)
P 		124.2
(2.9)
P 		124.8
(3)
P 		58
avr 58.1
(-3) 		90.1
(-0.2) 		95.5
(0.3) 		113.6
(1.9) 		126.5
(3) 		120.7
(2.5) 		68
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 44
(-3)
P 		80
(3)
P 		58.6
(-0.6)
P 		61.3
(-0.1)
P 		36
B 52.2
(-3)
P 		62.1
(3)
P 		55.5
(-1)
P 		61.2
(2.5)
P 		10
C 45.7
(-3)
P 		61.1
(0.9)
P 		69.7
(3)
P 		58.6
(0.2)
P 		24
avr 47.3
(-3) 		67.7
(3) 		61.3
(1.1) 		60.4
(0.9) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 10.3
(-3)
A 		25.6
(0.3)
P 		26.5
(0.5)
P 		31
(1.5)
P 		37.8
(3)
P 		27.4
(0.7)
P 		28
B 18
(-3)
P 		29.8
(-1)
P 		18.9
(-2.8)
P 		31.6
(-0.7)
P 		52.8
(3)
P 		46.6
(1.9)
P 		35
C 24.7
(-1.7)
P 		33.2
(0.6)
P 		22.2
(-2.4)
P 		19.9
(-3)
P 		40.2
(2.6)
P 		41.8
(3)
P 		22
avr 17.7
(-3) 		29.5
(-0.3) 		22.5
(-1.9) 		27.5
(-0.7) 		43.6
(3) 		38.6
(1.8) 		26
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181121_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17257
Sequence Type Exemplar sequence
Representative Public ID C46F2.1 NCBI
Target Description C46F2.1 /REP_DB=WormBase Gene ID /WP=CE17557 /TR=O61736 /GB=AAC16975.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076958(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076958 NCBI Caenorhabditis elegans C46F2.1 (C46F2.1) mRNA, complete cds. 11/11 None
SNAP00000037396 ENSEMBL cdna:SNAP chromosome:CEL140:X:8079229:8079826:1 9/11 None
C46F2.1 ENSEMBL cdna:known chromosome:CEL140:X:8077685:8079826:1 gene:C46F2.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000037399 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:8077683-8079825(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C46F2.1
Entrez Gene 183512 Entrez gene
SwissProt O61736 EMBL-EBI
WormBase CE17557 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC16975 Hypothetical protein C46F2.1 [Caenorhabditis elegans] ref|NP_509359.1| C46F2.1 [Caenorhabditis elegans] 1.0E-160
blast AAC16975 Hypothetical protein C46F2.1 [Caenorhabditis elegans] ref|NP_509359.1| C46F2.1 [Caenorhabditis elegans] 4.0E-79
Sequence
Target Sequence 
>C. ELEGANS:181121_AT
aaggtcacgcaatcgtgcattcagagaaatccgagcacaaagacgaagttcaccgagtca
ttggggatatggtcaaatgctatcggataatgctattttcatgggagaactgtcttgtca
aagtttgacggaatttggcgatgagataaatgttgatgacagccaattcacaaaggaact
tgaaattcgtagtgtcacagcagttgacgttgaaacaaaggagaagtatcctgttgttgt
cagaggtaaagatttcgttgtctaccgcaaaaagttcaacgaaataaatggacttatcat
gtttacgataaccataagttactatggttgttttcccttgggtagatcctgctatgcaat
cacagaatacccagggacatttaaaaaagtggtaccacacatcaatactaagaaacacac
aactcatcacaaacatcactcaaatcattcaactatgcaccatgaatcacaaaagctcac
attcaaatcgctcaaccttctttcattaccacacaaaaaagattgcacatggactagttt
tcttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGGTCACGCAATCGTGCATTCAGA 34 161 327 Antisense
GAAGTTCACCGAGTCATTGGGGATA 39 337 371 Antisense
GAAGTATCCTGTTGTTGTCAGAGGT 201 337 549 Antisense
GTTGTTTTCCCTTGGGTAGATCCTG 611 427 653 Antisense
GGTAGATCCTGCTATGCAATCACAG 39 505 667 Antisense
GCAATCACAGAATACCCAGGGACAT 474 321 682 Antisense
AAAGTGGTACCACACATCAATACTA 65 123 712 Antisense
ACACACAACTCATCACAAACATCAC 402 111 741 Antisense
CAAACATCACTCAAATCATTCAACT 470 191 756 Antisense
AGCTCACATTCAAATCGCTCAACCT 396 79 800 Antisense
GATTGCACATGGACTAGTTTTCTTG 32 435 847 Antisense
Sequence Source Affymetrix Proprietary Database